XLOC_017911 (si:ch211-232i5.3)


Basic Information

Item Value
gene id XLOC_017911
gene name si:ch211-232i5.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 8081709 ~ 8094718 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035338
CTGTTTTTAAAGGTGTGGTAAGGTCAGTTAATGGATATGCACATGTTAATGTAACTCATGGTGTTTAATGCAGATTACAGGCCAAGAAGAGCCCATATATCATGTTAAAGTGATTGAGGAATGTAAAGGCCGTAAAAATGACCTGCCGGTGAAGGTTGGAGACACCGTGAACATCATACGAACTGAAAACTGTCCTAAAGGGAAATGGCTTGCCAAGGACAGCAACAATACATATGGTTACATCCCGGTGGAGTGTGTGGATTTGAACATCAATGGCATTATGGAGTTGGGGAAGAAGACAACAGTGTCTAACAGACCTAACGGCAATGAGCACAAAGACACAGAAGCCCACAGTACAAACAGcagGAGCTCAGAGCATTACAACTTGAACCATGAGAGCTTCTCAGAAGACAGCGAGGAGTGGACATGTGAAGATGATGACCCAGCGTTTGGCACTCCCGATGAAACTGCACATGTAGAGCCGAATCAGTCACAGGCCACACCAGCTCAAGatgttgTCGATAAACCCCAAATTTACTCAACTTACAACGTACAAGCGAAACATGAAGCCCTTCAGAAACTCTCTACATTCTTCATGCAACCCAAAACACCGTCTCAACCTCCACAGCAAAGTGCTTCAAGAATGCCAGACCCAAAACCAGagcatGAAGGGGATTCTGGCAGCTTAGTTAACGAAGAGGAAGGAGGATTAGATACATCGGAACTCCAGATTCTGCCCCCTCCAGATCTGTATGCTGATTTAATCGCTGGAGATTCAGGGCCTGTTTTCACTAAGCCAATCAGACTCGTGCAGAAATAGCTGCGTGGCTGCTGAAGGGAGAGCCGTACTGCTGGATCTCTGAGTTCATAACCCTCCTGTGGGCTGAGTTTCAGTGAGAGCCACAGTAAATGTCAGCAAGAGACGCGTCTGTCAGCCGAGAACAGTTGTGTTTGGGATTGTGCATCTGCCTGGAAGAGGCTGCAGACGACTCCTATATTCATCTGCGTTACCTTCAGTTTGTGTCAAGACAGCCCTCGTGTGGAGATCATTTGGAGTTTTACATCGAAGCGTTGGTTCAGTTTCTATTGATAAAGAATCAGGAAAGACACTGCAGGTTAGTTGGGTAAAACTATTATCAGCGTTGACAGCATTCTTCATTTAATGCTTTAAGAATTGCAGATAGTTTTTGTATTACACTGTTTGTATATTGATGTTTTAATACGCAAATGAGCCATTGTTTCATTAAACATGTGCTAATTTGCATATATATCTAGCACAAGAATCTGAATATCGGATGAAGTCaggcttatttttattattattattaatattatttgttttattataattttttgacaTTAGCATTTT

Function

symbol description
si:ch211-232i5.3 Predicted to be involved in T cell receptor signaling pathway; integrin-mediated signaling pathway; and protein localization to plasma membrane. Predicted to act upstream of or within immune response. Predicted to be located in actin cytoskeleton. Predicted to be active in plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000086874

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035338 True 1369 mRNA 0.43 11 8081709 8094718

Neighbor

gene id symbol gene type direction distance location
XLOC_017910 plpp3 coding downstream 57127 7964356 ~ 8024582 (-)
XLOC_017909 NA coding downstream 128527 7951782 ~ 7953182 (-)
XLOC_017908 CR848049.1 coding downstream 433384 7646762 ~ 7648325 (-)
XLOC_017907 NA coding downstream 443057 7612155 ~ 7638652 (-)
XLOC_017906 usp24 coding downstream 498223 7443224 ~ 7583486 (-)
XLOC_017912 si:ch211-232i5.1 coding upstream 6352 8101070 ~ 8110672 (-)
XLOC_017913 NA coding upstream 27975 8122693 ~ 8443425 (-)
XLOC_017914 CR388209.2 coding upstream 699784 8794502 ~ 8835094 (-)
XLOC_017915 CR388209.1 coding upstream 842185 8936903 ~ 8937004 (-)
XLOC_017916 oma1 coding upstream 963961 9058679 ~ 9123296 (-)
XLOC_017928 CU539064.1 misc upstream 1958687 10053405 ~ 10053701 (-)
XLOC_017904 NA non-coding downstream 870513 7191883 ~ 7211196 (-)
XLOC_017902 NA non-coding downstream 942567 7138063 ~ 7139142 (-)
XLOC_017896 CT583652.1 non-coding downstream 1498039 6581799 ~ 6583670 (-)
XLOC_017925 AL645822.1 non-coding upstream 1811550 9906268 ~ 9906384 (-)
XLOC_017930 NA non-coding upstream 1982439 10077157 ~ 10078215 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_02359343_02360115 NA coding CI01000051 null 2359091 ~ 2360115 (-)