XLOC_017912 (si:ch211-232i5.1)


Basic Information

Item Value
gene id XLOC_017912
gene name si:ch211-232i5.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 8101070 ~ 8110672 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035339
GAGGGCCAATGGGCGAGTTCTCACTCTGTGTGCTATTTATCCTGAAACAACTGCGACACAACACCATTTCAGTTGTACATGCTGAATCTTTTCTAATCGTTAAGGAATAACTCAATGGATTATTAGTTTATGAGGCGTTGAGAAGAGAGAAATATGTTCTTTTAACAAACTGCGGGAAGATTTTGTCTCACAATGATGGAACAGGATGAATCAGCAAGGTTTGGGGGAGAAAATGGTCTGAAGATCCATCCTAAACCTGTCATCCCAGAAAAACCTAAAGGCATCCCACCTCCATCAAAAGTCAGCAATCCATTTGTCTCCTCCCTCAATGCTGCTGTGAGAAAAGGGGAGATTCTCGCACCACGTGTAGTCTTTAAAGATGACAAAAATCTCAGTCGCCAGCTCTCCCCACCTTGGGGATCAAAACCCAGTGACAACCAGTTCGTCAATAACACCGAACTGCTGGATAATAACCAAAAGAAGGAGGTTGATGCTATTAAACAGAATCTCAAAGACAAGAATCCCCCACTGGTTTCACCAATGTCTCCAAAAATAGATGAAACCTCAGAGCCTGAATGTAGTCCACGCACACCTGTGTCCGCTATACCAGCCAAATGGTCAACACCTAAGAAGTTTGTATTTAACCCCCCAAAAACTAGCAAAGTTGAAATCAACCAAACAGAACATACGAGGGGGGTTGAAGTTGCCAAGAAGTCTATGAAGGACAGAAATTTTCCATTGGTTCTGCCAATGGCTCCGAAAAAAATTGAAACTTCAGAACCTGAACCCAGCATATTTACACATGTGTCTGTTCCACCATCCACACCCAAGAGCTCTGTTATTATCCCTCAAACAGCCAGTAAAGTTGTCAATGAGAATGCAGATGTCACAAAAGAGTTCAATGTTGCAAAAAAGTCTATAAAGGAAAGGAATCTTCcacttgttttgccaacaaaAGCTGAAACCCCAGAGCCTGGAAGCAACCCCAATACACCAATGGCCATTTCACCAATCAAAGTATCTACACCCAAGAGTTTTGTATTTAACACTCCAAAAACTAGCAATGAGAAGTCAGGAACAGTGGAAAGTTCAATTAAAGTGGAAAGCCCAATTCCAGCAAGTCGTACTCCTGCTTCGCATCCCCCAACTTTTACTGCCCCATCGGTTGCAGCATTTCCCCCCACTGAAAGTGTTCCAGTTGTCCCTAAGGCTGTTGTTCCTTCTCAGACTTCAGTTGTAGCACCTTCTATCCCCAACACTCCTGCCCCAAGCATTCCAACCCCAAGCATCCCGACCTCTGTTAACCTTGAGCCAAAGATTCTTGAGCCAAAGATTCTAGAACCAAAGATTCTTGAGCCAAAGATTCTTGAGCCAAAGATTCTTGAACCAAAGATTCTTGAGCCAAAGATTCTTGAACCAAAGATTCTTGAACCAAAGATTCTTGAACCAAATATTTCTGAGTCAAAGATTCTTCAGTCAAAGATTTCTGAGCCAGCCATTACAACACCAGTCATTCCTGATCAAACTGTCCCTAAGACTTCTAAACCAGATCCATCTTTTACAACTCTTTCTGACACCAAACCTCtaaaacctattttaaaaatgctcaatTTGTCAGAAGTATTTCCTCCCCCTGAAGGAAGCCCTCCTGCAGAATTCACTGATATTCCTCCCCCTCTTCTTGAAGATTATCCCGAGGGAGACTTATTAGAGCAAATCAAACCCACTCCAGCAATCCGTACATCTATCCCCCCAATTTCCAGGAGTCCAGATATCTCTAGCTTATCATCTACCCCTGCATTGTCTTCCCCTCCAGTGGTATCTCCAGAAACTTTGGTGAAGCCCTTAGACATTCATACTGTAGTTAAACCTGCAGATGTGGTGCTGGAGAATACAGAAAGTCTCACTGACAATCCTGACAGGATAAAAGAGGAACATCCCTCAACCAAGCCACTTTCACCCCTCTCAGTCTTGGCAAGAGCAGAAGAGATGGCCTCAGTAAAACGGACACCACCTGATAGCCGTATTTTTAACCTTCTGGAACGGGCTAAGAGAAAGTCAACAGCGATTCAGTTGGCTACCACACCTGGGCATACAACCCCAACGGAGACAGTCACGCCTGAGATACCTCTGCCTGAAACTCCCACACCTCTGCCTGAGACTCTCACAACTGAGGTGACACAACCTAAGGTGACTCCACCTGAAAAGGCATTACCACAGCTTGCCACAACTGTAAAAGCACTGCATGAGGAAGCTCCATCAGAAGTCCCTGTTATCCCTAAACTCCCTCCAGTTGACTATGTAGATCATGCAAGGTTTCCACCTAAAGCCCAAATACCTGAACTGGCCAAGGTTAATGGCCTTGATAATAGGGTGTTGACAGTGGTCAAACCAGTACATCCTCCTCCACCACCACCTAGGAAAGCTCTGCCAGCCACACCCATGGTGGACCCTCTATTAGAAAAAACAACTCCATCTCCTGCGCTTCACCTCCAGAGACCGAAAACACCATCTGAACACCTAGAAACACTTGAAGGATCACTACATGACAGCTCATTTGGAGAGATATTTTATGATGCTGAAGAACCTGCCACTCCTGCAGTTTCCACCTTCAGGCCTCCGTCAGTACCATCATCATCCTCTACTCCCAAAAGACCACTTTCAGGTCATGAGGAAGTCCTCCTGAAACAGCACAACCCAAAACCTCAAGTTAAAGAGGTTGTACCTCTGAACATGGAGGATATGGATTATGGGTCTATGAACTCTGGCTCTCCGAACACAGACATTCAAGTTGCTGTGCTTAAGGACTCAATGCAAAAATCACCTGCCTTGTCTCCATCAGGGACCCTTGAAAGAGCTGATAATGTCTTTGACGATCACACAGAAAGTAAAAAAGGcaaaacaataaagaataaaaaacagaaaGGACCTCCAAAGAATCCATACGCTGATACAGCGGCTCAGGTTCAGGAGGCTCCCAAGAAAAGCTTGTTTGCCAGGAAGAACTCTGCAAAAGCAGTAgatgaaaaggaacaaaagaaaaaagacaaacagcGAGAAAAGGAAAAAGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078072

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035339 True 3071 mRNA 0.44 8 8101070 8110672

Neighbor

gene id symbol gene type direction distance location
XLOC_017911 si:ch211-232i5.3 coding downstream 6352 8081709 ~ 8094718 (-)
XLOC_017910 plpp3 coding downstream 76488 7964356 ~ 8024582 (-)
XLOC_017909 NA coding downstream 147888 7951782 ~ 7953182 (-)
XLOC_017908 CR848049.1 coding downstream 452745 7646762 ~ 7648325 (-)
XLOC_017907 NA coding downstream 462418 7612155 ~ 7638652 (-)
XLOC_017913 NA coding upstream 12021 8122693 ~ 8443425 (-)
XLOC_017914 CR388209.2 coding upstream 683830 8794502 ~ 8835094 (-)
XLOC_017915 CR388209.1 coding upstream 826231 8936903 ~ 8937004 (-)
XLOC_017916 oma1 coding upstream 948007 9058679 ~ 9123296 (-)
XLOC_017917 ylpm1 coding upstream 1061629 9172301 ~ 9199721 (-)
XLOC_017928 CU539064.1 misc upstream 1942733 10053405 ~ 10053701 (-)
XLOC_017904 NA non-coding downstream 889874 7191883 ~ 7211196 (-)
XLOC_017902 NA non-coding downstream 961928 7138063 ~ 7139142 (-)
XLOC_017896 CT583652.1 non-coding downstream 1517400 6581799 ~ 6583670 (-)
XLOC_017925 AL645822.1 non-coding upstream 1795596 9906268 ~ 9906384 (-)
XLOC_017930 NA non-coding upstream 1966485 10077157 ~ 10078215 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_02362692_02367269 NA coding CI01000051 null 2361767 ~ 2367269 (-)