Fish Transcriptome and Expression Database

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model fish

XLOC_017915 (CR388209.1)

Basic Information

Item	Value
gene id	XLOC_017915
gene name	CR388209.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007131.7
NCBI id	CM002904.2
chromosome length	55201332
location	8936903 ~ 8937004 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035349
ctcgctacggtggaaCATACTAAAATttgatcgatacagagaagattagcatggcctcTTCAAAAGGATTACatgcaaatccgtgaagcgctccgtattttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000080258

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00035349	True	102	snRNA	0.41	1	8936903	8937004

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_017914	CR388209.2	coding	downstream	101809	8794502 ~ 8835094 (-)
XLOC_017913	NA	coding	downstream	493478	8122693 ~ 8443425 (-)
XLOC_017912	si:ch211-232i5.1	coding	downstream	826231	8101070 ~ 8110672 (-)
XLOC_017911	si:ch211-232i5.3	coding	downstream	842185	8081709 ~ 8094718 (-)
XLOC_017910	plpp3	coding	downstream	912321	7964356 ~ 8024582 (-)
XLOC_017916	oma1	coding	upstream	121675	9058679 ~ 9123296 (-)
XLOC_017917	ylpm1	coding	upstream	235297	9172301 ~ 9199721 (-)
XLOC_017918	syt14b	coding	upstream	304790	9241794 ~ 9278252 (-)
XLOC_017919	rdh14b	coding	upstream	484444	9421448 ~ 9428021 (-)
XLOC_017920	crip2l	coding	upstream	491961	9428965 ~ 9462449 (-)
XLOC_017928	CU539064.1	misc	upstream	1116401	10053405 ~ 10053701 (-)
XLOC_017909	NA	non-coding	downstream	983721	7951782 ~ 7953182 (-)
XLOC_017907	NA	non-coding	downstream	1298251	7612155 ~ 7638652 (-)
XLOC_017904	NA	non-coding	downstream	1725707	7191883 ~ 7211196 (-)
XLOC_017925	AL645822.1	non-coding	upstream	969264	9906268 ~ 9906384 (-)
XLOC_017930	NA	non-coding	upstream	1140153	10077157 ~ 10078215 (-)
XLOC_017933	NA	non-coding	upstream	1410779	10347783 ~ 10422813 (-)
XLOC_017935	NA	non-coding	upstream	2042454	10979458 ~ 10992289 (-)
XLOC_017936	NA	non-coding	upstream	2074193	11011197 ~ 11016927 (-)

Expression

Co-expression Network