XLOC_017918 (syt14b)


Basic Information

Item Value
gene id XLOC_017918
gene name syt14b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9241794 ~ 9278252 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035355
CTTTGACGAAAGGAAAGGCAGGTCCTGGGTTGAGGGGCTGGTTCTCGTTGTCCTGCTGATGTTGAACATATTTCTCCACACCTTCTTCCTCAAAGATCTTCCTTTCCGCCGTCAAGTCAAACAATGTCCGGGAAGAAACGGCGATAGTGACTGCATTTTTCGGCTTGGGCTGTTTAAAGACACGTTCAAAAACAGCACAAGTTAAACTCAAACATCTGTCAGCAACTATTTCGCAAACTGTCGTGTTGTTGAACTTCACAGATCAGGCTACGTTACTTACGGGTCTCGGTTTCTTAGACTTCAAGTTTTCATAATGCGCTTTAGCGGCCGCCCAGTCTTTTTCTTCGGACGGAGCTGCTTTTATATCAGCTGAAGCCACTTCTGTCGTTTTTATTTCGCTCATTGTGCGCTTTTGAGAGGTCTGTTAATAGTAGTGTGTGTTGAACTTCCTAGAGGCTGGGCTGGATATCCGACATCGCGGAAATGTGTACGGGTTGGATGCTGAGCACAGGAGGAGGCGCTCCGTTTGACGCAGGAGGTGGGGGGCGGAGCTGTGGTGTTCATGAACTCATCTGTGCTAGAAGAGTATCTCCAGAGCTGCTAGGTGTCCTGTCCTCCATTGCTGTCTTCATGGCCGTGATCGCTCTGTTTTTTCTTTACCTCAGCAGCAAGCTTTCAGTGGAGAGCCCGAGAAGTGATCTGCCACGTTTTGAAAGTTTTGACAAGAGCTTGCAAGATGGGGGCTGTGCAGAAAAAGGATCAGAAAGTGAAGAtgaaacacagaaaaaacacAAAGACTCTCATCAGCAGAGGAGTGGATGGAGAAACAGGGATGAAGAGAATGAAGATTGCAGCAGTGAGGCCTCGGCTGAGCTGGGATGTAAACATAGTTCATTTGTTTCTCGCAATtcagttaaaagaaaaaaaggttcaAGTTCTTTGAATGAACTTCAGCCTCCGCCATATCGGGACAAAGATGATGTAAAGCGTGGTTCAAGGGGCCGCAGTGACTCTGCAGAGGGTAGTGGAAGTGAGATCAGTGAGGGGACTGAAGACCCTGAGGACACAGAGAGTTACCTGAATAAGGGCTATGAAGAGGACGCACCCAGCGACAGCACTGCTGTTTTGGGCCCGGAGGATAGCTTAATCCCACCCCTTCCAGAATCATACGAACCAGAGGCACTGGGGAAATACGGCACATTGGATGTGGCATTCGAATATGACCCTGGCGAGCAACGGCTTGCGGTGACGGTGACTGCTGCCACAGATATTCCAACACTTAAAAGCACAGGGAACATTTCCTGGCAGGTCCACCTGGTTCTACTGCCCACCAAGAAGCAGAGGGCCAAGACAGGAGTTCAAAAGGGCCCCTGTCCTGTTTTTACAGAAACATTCCGGTTCTCATGTGTAGAGGAGGATGCACTGGGGGATTATGCTGTCCGGTTCCGTCTCTACAGTGTGCGGCGCATGAAGAAAGAGAAGGTCCTTGGGGAGAAGGTGTTCTATTTAACCAAACTCAATCTGCAGGGCAAGCTTGCACTGCCCGTCACGCTGGAGCCAGGCACATCAGTTCCTGGCTGCGGATCAGTGGTGAGTGTCTCTCGTAGTGCAGGAGCTCTATCCTGCCGCTCCACTGGTGAATCCTCCATTCCGGAGCTTCTGCTGGGTCTCCTCTACAACTCCACCACAGGAAGACTGTCCGCCGAGGTTATTAAAGGCAGCCATTTTAAAAACTCTGCCTCTGATAAACTGCCCAACACTTATGTGAAGCTTACAATGCTGGACTCCAAAGGGAAGGAGATGTCTAAATGTAAGACCTCTGTCTGCCGTGGCCAGCCCAACCCAACCTACAAAGAGACATTTGTCTTCCAGGTGGCACTTTTTCAGCTATCTGAGGTCACCCTCCAGGTATCTGTGTACAGTCGCCGGAGTAGCATGAAGAGGAGAGAGCGGGTAGGTTGGGTCGCTCTGGGCCTCAACAGCACCACAGAGGAGCAAGAGGAGCACTGGACTCAAATGAAGGAGTCAGAGGGTCAGCAAGTCTGCCATTGGCACACACTCATCGATTCCTAGGGGAAGCAGTTTAAAAATGTGGTTTTACAAATTTGAGTAAGAGTTACTGCTAAGTTTCAAGGTGTGTCCTAATTTACTGACTCATGTCACTCCAGAGTCATTTGAAATTTAGAGtggcatgagggtgagtaaatggctATTGGCTATTCTAAAACTGGGTTTAAAGTTAGTCTCTGTACTGAAATTTGGGCAGGTAAGGGCAAAACAAATCCCTTGTTCACTCTCAATACTGCGGCCATAAATTTGCTTAGCACTTTTAAAACAATAAGGATTGtagtatataattaaatatggGTGTTGAAATGTTGACAAACTAAAATCTTACATCTAATTAGTGTGGGGAAATGTTAGCGTTATGTGTTCCAACCCTCAAAGCCCCAGAGTTTGTTTCATTCTGAAGGGCTCATCCCTTATGCCAGGGGTCAGGGGCAGTGTCaggcagggtttagcttcaagcCCAGTCAAaaaccattcattaatttttcttcggcttagtccctttattcaccagggggaccaa
>TCONS_00035356
CGCCGCAGCATCACGTCTGTCCCAGGGCCAGTACATCATCTCCTCCCCTCCTCTCAGCGTGGAAACACCTTCTCTCCACAGCACCTCATCACGTCCCATTCACACACAGCATCATGGCGTTTGAGGGTGGGGGGCGGAGCTGTGGTGTTCATGAACTCATCTGTGCTAGAAGAGTATCTCCAGAGCTGCTAGGTGTCCTGTCCTCCATTGCTGTCTTCATGGCCGTGATCGCTCTGTTTTTTCTTTACCTCAGCAGCAAGCTTTCAGTGGAGAGCCCGAGAAGTGATCTGCCACGTTTTGAAAGTTTTGACAAGAGCTTGCAAGATGGGGGCTGTGCAGAAAAAGGATCAGAAAGTGAAGAtgaaacacagaaaaaacacAAAGACTCTCATCAGCAGAGGAGTGGATGGAGAAACAGGGATGAAGAGAATGAAGATTGCAGCAGTGAGGCCTCGGCTGAGCTGGttaaaagaaaaaaaggttcaAGTTCTTTGAATGAACTTCAGCCTCCGCCATATCGGGACAAAGATGATGTAAAGCGTGGTTCAAGGGGCCGCAGTGACTCTGCAGAGGGTAGTGGAAGTGAGATCAGTGAGGGGACTGAAGACCCTGAGGACACAGAGAGTTACCTGAATAAGGGCTATGAAGAGGACGCACCCAGCGACAGCACTGCTGTTTTGGGCCCGGAGGATAGCTTAATCCCACCCCTTCCAGAATCATACGAACCAGAGGCACTGGGGAAATACGGCACATTGGATGTGGCATTCGAATATGACCCTGGCGAGCAACGGCTTGCGGTGACGGTGACTGCTGCCACAGATATTCCAACACTTAAAAGCACAGGGAACATTTCCTGGCAGGTCCACCTGGTTCTACTGCCCACCAAGAAGCAGAGGGCCAAGACAGGAGTTCAAAAGGGCCCCTGTCCTGTTTTTACAGAAACATTCCGGTTCTCATGTGTAGAGGAGGATGCACTGGGGGATTATGCTGTCCGGTTCCGTCTCTACAGTGTGCGGCGCATGAAGAAAGAGAAGGTCCTTGGGGAGAAGGTGTTCTATTTAACCAAACTCAATCTGCAGGGCAAGCTTGCACTGCCCGTCACGCTGGAGCCAGGCACATCAGTTCCTGGCTGCGGATCAGTGGTGAGTGTCTCTCGTAGTGCAGGAGCTCTATCCTGCCGCTCCACTGGTGAATCCTCCATTCCGGAGCTTCTGCTGGGTCTCCTCTACAACTCCACCACAGGAAGACTGTCCGCCGAGGTTATTAAAGGCAGCCATTTTAAAAACTCTGCCTCTGATAAACTGCCCATTGGCCTGTTTTGTTGTGTAAAACACTTCATTAGTGGGCAACTATATATCATGAGAGACACTTATGTGAAGCTTACAATGCTGGACTCCAAAGGGAAGGAGATGTCTAAATGTAAGACCTCTGTCTGCCGTGGCCAGCCCAACCCAACCTACAAAGAGACATTTGTCTTCCAGGTGGCACTTTTTCAGCTATCTGAGGTCACCCTCCAGGTATCTGTGTACAGTCGCCGGAGTAGCATGAAGAGGAGAGAGCGGGTAGGTTGGGTCGCTCTGGGCCTCAACAGCACCACAGAGGAGCAAGAGGAGCACTGGACTCAAATGAAGGAGTCAGAGGGTCAGCAAGTCTGCCATTGGCACACACTCATCGATTCCTAGGGGAAGCAGTTTAAAAATGTGGTTTTACAAATTTGAGTAAGAGTTACTGCTAAGTTTCAAGGTGTGTCCTAATTTACTGACTCATGTCACTCCAGAGTCATTTGAAATTTAGAGtggcatgagggtgagtaaatggctATTGGCTATTCTAAAACTGGGTTTAAAGTTAGTCTCTGTACTGAAATTTGGGCAGGTAAGGGCAAAACAAATCCCTTGTTCACTCTCAATACTGCGGCCATAAATTTGCTTAGCACTTTTAAAACAATAAGGATTGtagtatataattaaatatggGTGTTGAAATGTTGACAAACTAAAATCTTACATCTAATTAGTGTGGGGAAATGTTAGCGTTATGTGTTCCAACCCTCAAAGCCCCAGAGTTTGTTTCATTCTGAAGGGCTCATCCCTTATGCCAGGGGTCAGGGGCAGTGTCaggcagggtttagcttcaagcCCAGTCAAaaaccattcattaatttttcttcggcttagtccctttat

Function

symbol description
syt14b Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-36 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000001891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035355 False 2593 mRNA 0.48 8 9241794 9278252
TCONS_00035356 True 2186 mRNA 0.49 9 9241810 9273669

Neighbor

gene id symbol gene type direction distance location
XLOC_017917 ylpm1 coding downstream 42073 9172301 ~ 9199721 (-)
XLOC_017916 oma1 coding downstream 118498 9058679 ~ 9123296 (-)
XLOC_017915 CR388209.1 coding downstream 304790 8936903 ~ 8937004 (-)
XLOC_017914 CR388209.2 coding downstream 406700 8794502 ~ 8835094 (-)
XLOC_017913 NA coding downstream 798369 8122693 ~ 8443425 (-)
XLOC_017919 rdh14b coding upstream 143196 9421448 ~ 9428021 (-)
XLOC_017920 crip2l coding upstream 150713 9428965 ~ 9462449 (-)
XLOC_017921 zfp36l1b coding upstream 297122 9575374 ~ 9580446 (-)
XLOC_017922 nid2b coding upstream 365247 9643499 ~ 9674877 (-)
XLOC_017923 si:dkey-63j12.4 coding upstream 473491 9751743 ~ 9760424 (-)
XLOC_017928 CU539064.1 misc upstream 775153 10053405 ~ 10053701 (-)
XLOC_017909 NA non-coding downstream 1288612 7951782 ~ 7953182 (-)
XLOC_017907 NA non-coding downstream 1603142 7612155 ~ 7638652 (-)
XLOC_017925 AL645822.1 non-coding upstream 628016 9906268 ~ 9906384 (-)
XLOC_017930 NA non-coding upstream 798905 10077157 ~ 10078215 (-)
XLOC_017933 NA non-coding upstream 1069531 10347783 ~ 10422813 (-)
XLOC_017935 NA non-coding upstream 1701206 10979458 ~ 10992289 (-)
XLOC_017936 NA non-coding upstream 1732945 11011197 ~ 11016927 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_05657394_05672861 SYT14B, SYT14 coding CI01000051 null 5657394 ~ 5674202 (+)