XLOC_017921 (zfp36l1b)


Basic Information

Item Value
gene id XLOC_017921
gene name zfp36l1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9575374 ~ 9580446 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035361
AGTTTTGGCAGGACAGAGGGGGCTCTCTGCGGGGCAGAACTATATCAAAGACCCTTCAAACACAGGAATACTCCCACCGTGCCTTAACAAACCATATGTTTGTCAACTTTGAAGAATTTTCAGCCAGCCCCGATTCGACAATGACTGCCGTTGTGTCCTCTTTCTTCGACTACGAAGTGACGAATAAGAACAATAAGGTGATGACCTTCAACAGTCCCCTCTCCAGTCCCCATTTACAGTCTGTCCCCTCCATGGGTGCCAATTCCTCCTTTACCCCCACCGGGACCCTGCTGGACAGGAAGGTGGTGGGTGCCCCTTCAGTGGGACTCTATCAGCGCCGCCACTCTGTGTCCGTTACCAGTTCCAAATCAACACAGAACCAATTTATAAACAATCTCAAGATGGACAACTCGGCCTCCATAAACGGCAGCAGCAACAACAAGGAGAACCGCTTCCGTGACCGGTCCTTCTCCGAAAACGGGGAACGTCTGAGGCCAAGCAGCATTACATGCATTAGTGCCAATGGAAATGGCCAGGTCAACTCAAGCCGCTATAAGACCGAACTCTGCAGACCCTTCGAAGAGAACGGCACCTGTAAATACGGCGACAAGTGCCAGTTTGCTCATGGGATGCACGAGCTTCGTAGTCTAAATCGCCACCCTAAGTATAAGACCGAGCTCTGCCGCACCTTCCACAGCATTGGTTACTGCCCGTATGGGCCACGATGCCACTTCATCCACAATGCCGAGGAGCGCCGCGGACCCCCTCCTCTCTCATCGTTCAATAAGATGGAGCGCCCCCGTCTTCATCACAGCTTCAGTTTTGCCGGTTTCCCAAGCTCAGGTGGTTCCCAGGACAGCCCAACCTCTGTCACACCTCCGCCCCTGTTTTCCGCAGAAGACCTCAACGAGTGGTCCAGCAACCCGTTTGCTTTCTCAAGTCAAGAGCTCGCCAATTTGTTTGTACCCAGTTTAGGTGGTACCACCATTCCCGATCTGCCTGGTCCTCACTCACCCACCTCCTTCTTCAGACCCATGTCCGAGTCTCCACCAAGCCCTCCAGACTCCCTTTCCGACCAGGAAGGCTACCAGAGCAGCTTGGGCAGCCAGAGCGGATCTGAGTCACCACTGCTGGATGCAACGCGTCGCCTTCCCATCTTCAGCAGACTCTCCATCTCTGACGATTAAAATCTTTCCCGAGAGGTTTTAGGCCTGAGAGAGAAGGCATGGAGAGCTGGCGAGAATGAGAGAGTAATTTTCCTCCTAGCAATCCCTTCCTGTCCTTGCTTTGTTTACAGCAGAGAAGTGGACTAAAGTACAGTGTTCTTGTAGCCACTGAGTCAAATCAGAACTTACTACCCCCCTGTAGCATCAAACTTAAGTGTCTACCCGTGCCTCCCTAGACGTCGTTAACATGCCTGACGTAATGCAAAAACCAGAACTGTTCCCTTCAAGGCCTACTGGAACATGCTAAATCCATACTTAGGTTGTGGTGTTCAAACTAAAGTGCGGTTTCCTGAATCATCCAAGGACCTTCTTGTTCAAAGAATCTACTGAATTTTATAACATCAGACCTAAAGGTGCCACTTTTCTTGCAGGAGATCCTTGCTGGTAGATCATCGGGACTTAAAGTGCCTATCAAACTAATTATTTTCCTACTTTTCCAATCAAAGTGATTATTGTCCGGGGTAGAAAAGGTTTAAAGAAAAGAATCAAACCCATCTGAGAGTTGTATGAATCATTCTGAAAGTATGCCTAGTGGTGCTAAATGTGCTGTCACCGTGGTAATTATCCCTAGAACATGTGATCCCtcactcttaaaaaaaaagtgtccgCTGGTTGTTGGATTATGTAAGAGAGAAGAGGTCCTTCCTTTAATCTTTCTGTTGGAGTTACCACTAAAGATATGACTTCAGTGGCCACTAATTTTTTGGTTGAAATGTTTCAATATCATTATTTCAATATCGTATTTCCcctattattgttataataacgTTATTATTGCATCATTACAACTCTTGTTGGTATTTTCTGTTTGGAAAATGAGAACTTTCGAACCGAAAGTTTTGCTTGTCAATGCTTATTTAACttatcaaaaatgtatttattgctgattgtaagcatttttttattttgtttgtatttatctgGATAATGAAACAATAGAATATATTTTCCTTTATGTTAAATTATGATCTTCCGTATTAATCGTAAGATTGTGAAGACCTTTTTTTGCGTTAAGTTTCAACAGTTAATATATTATACTGCAATGACATTTTGTAACTacgttttgatttatttttaaagtgaaacttaatttaaaatgagAATGCAAAGaggatttttttgcattttatttattattttcctccCTGATGTTGGACTGCAGTTTCAGGATGTTTATGCCTCTATAATCCTTTATTATTTGGCTCCGACCGTCTAGAATGTAAACAGACTTGTCTTGACAATAACAGTCCTGTGCCTGTGATTTTTATAAATCTCATGTTTAGACTGGGATCCTCTCATCAAGACTCAATTCAGTATGAACAAATCGTAGACAGTAAATGCATTATAGTGCCAATCTCACGACCCCCGCGGTGGTCCAAACCTCTGATCGCAACATTCTGATCCGACATGTCTAAAACAGACGGTTTATAAGGGAATTGTTAAAtatgcatttgtgtatttatttcgCCCGTTTTAAACCATGATGTGTTCACCAGTAAGCATGTGTTTTTTTGATTTGTTATGACTCAAAATTCGTATTTATTTACAGATTTTGGACCACTTCTACTTTCCAAGTGCCTAACAGTACATTCCGAGAGTCTTGTACCTTTTAGGATTGTAATCCAGAGTCGTTATTTAGATTTTAGCAGGAATTCAAGGTTAACAGGATTGACATTGACAGAACTACAGTTGAATGTGTCCTATGTTTGCAGCTATTGCTGTTCACAACAATATGTTTTCTTTTGTAACGACAGATTGCAGTTTAAACcaataaaaatatctatttataaGCTAA

Function

symbol description
zfp36l1b Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including epidermis; nervous system; neural crest; neural plate; and ventral mesoderm. Orthologous to human ZFP36L1 (ZFP36 ring finger protein like 1).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2391 Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including epidermis; nervous system; neural crest; neural plate; and ventral mesoderm. Orthologous to human ZFP36L1 (ZFP36 ring finger protein like 1).

Ensembl:

ensembl_id ENSDARG00000021443

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035361 True 3021 mRNA 0.43 2 9575374 9580446

Neighbor

gene id symbol gene type direction distance location
XLOC_017920 crip2l coding downstream 112925 9428965 ~ 9462449 (-)
XLOC_017919 rdh14b coding downstream 147353 9421448 ~ 9428021 (-)
XLOC_017918 syt14b coding downstream 297122 9241794 ~ 9278252 (-)
XLOC_017917 ylpm1 coding downstream 375653 9172301 ~ 9199721 (-)
XLOC_017916 oma1 coding downstream 452078 9058679 ~ 9123296 (-)
XLOC_017922 nid2b coding upstream 63053 9643499 ~ 9674877 (-)
XLOC_017923 si:dkey-63j12.4 coding upstream 171297 9751743 ~ 9760424 (-)
XLOC_017924 cgrrf1 coding upstream 195944 9776390 ~ 9780917 (-)
XLOC_017925 AL645822.1 coding upstream 325822 9906268 ~ 9906384 (-)
XLOC_017926 gjd2b coding upstream 378060 9958506 ~ 9963713 (-)
XLOC_017928 CU539064.1 misc upstream 472959 10053405 ~ 10053701 (-)
XLOC_017915 CR388209.1 non-coding downstream 638370 8936903 ~ 8937004 (-)
XLOC_017914 CR388209.2 non-coding downstream 740280 8794502 ~ 8835094 (-)
XLOC_017913 NA non-coding downstream 1131949 8122693 ~ 8443425 (-)
XLOC_017909 NA non-coding downstream 1622192 7951782 ~ 7953182 (-)
XLOC_017907 NA non-coding downstream 1936722 7612155 ~ 7638652 (-)
XLOC_017930 NA non-coding upstream 496711 10077157 ~ 10078215 (-)
XLOC_017933 NA non-coding upstream 767337 10347783 ~ 10422813 (-)
XLOC_017935 NA non-coding upstream 1399012 10979458 ~ 10992289 (-)
XLOC_017936 NA non-coding upstream 1430751 11011197 ~ 11016927 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_05514127_05516929 ZFP36L1B, ZFP36L1 coding CI01000051 null 5512756 ~ 5517785 (+)
bowfin (Amia calva) G147687 NA non-coding CM030141.1 CM030141.1 2350041 ~ 2354058 (+)