XLOC_017922 (nid2b)


Basic Information

Item Value
gene id XLOC_017922
gene name nid2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9643499 ~ 9674877 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035362
TGTTGACATCATCTTCACTGCGGGAGTACATGGTGGTGTCAGAAAATGGTGGATCTGAGACGTTGTCCTACCTACTACAGCAGAACATGAGTTTCAGTGGATGTGCACATGATCCCAGGACCACACCAGACTTTCAGCAGGTGAACGTGGAGCATCTGATGGTCATGTTCACAGAGGGAAACACACTCAGATATGCCATCAGCAACAGAGTGGGACCTGTAGGAGGTGAGCTACCTGGACTTGTAGAGTTGAATCCATGTTTAACTGGGAAGCACCATTGTGACCCGATGGCCCTCTGTCTGCCAGGGGACGGCACTCAGTATCTCTGTCAGTGTGCTATGGGCTACCAGGGCGATGGACAAAACTGCTACGGTAGGAATCTTTCAGTGTTTCAGTGTCACTTGATTTTGACATCAAGCCAAGCATGCTCCACCGAGAGCTCGGTTCTCTCTTCTGAGGCCTTTAATGAATTACTGCCAGAGTTAAAGTGGTGAACGACTCTCATGGGTTTTCAATCTGTAATCCAGATGTGGATGAGTGCGCGGAGGGGCTCAGTTCCTGTGGTCCTCATTCTGACTGTGTGAACATGCCGGGTGGCCATCACTGCCACTGTCAGTCTGGCTACGAGTTTGACCTCGATTTGCATGAGTGTGTGGataTCGATGAGTGTTTCGAGGAGCTCTGTCATCCGTTTGCTTCCTGCTCAAACACCCAGGGCTCGTTCCGCTGTCAATGCTGGCCTGAATACAAGGGCGATGGCTTCCTCTGCCAACCACCACcAAAAAGGCCCAAGCCTTCATTAACTGCATGccagcagcacagaaacagccTGCAGGAGAGTATGAGCATGTATCCAGCTCTGGAGGCTTTTGTTCCAAAGTGTGATGATAAAGGCCAGTACAAACCCCTGCAGTGTTTGGGCTCCACTGGACACTGCTGGTGTGTGGACAGCAGGGGGCAGGAGAGAGTGGGCACCAGGACAATGCCTGGCACAGCTCATGCCAACTGTGATCAACCAGCTGCTCTGGTTCCCCGTGTGGAGACTGTGTGTGAGCGTTGGAGGCTTGCACTCATGAGTCACTATAATGGTCAGCCGTCCTCTCAGGACTACATGCCCCTCTGTGACGCTCACGGAAATTTCCAGCCTGTGCAATGTTATGGCAACAGCGCTTTCTGCTGGTGTGTGGACCGACATGGTGTTGAAATTATTGGAACCCGGTCCAACGAGGATGTAAAGCCCCCCTGTATATCTGGTGATGCCGCCCCACTCAACAATGCACTGATGTATCCGGTTATAAGCTCCTCCCCTTCAGGCCCTGCTATACTTTACACACAAGCCTCACAGATTGGAGTCATTCCACTTGAAGAAACAGACCCAGTTCAGGAAAAGTCCACTGTGTTATTAGCCTTACAGGACTCGGTTGTGATTGGAATTGACTATGACTGTCAGGAGAACATCTTGTATTGGACAGATTTTGGACGACATACAATTTACAGAGCAGTTCTAATATCTGGGTCTGAACCAGAGGCTGTTATCAGCAaagACTTGATTCAGCCGGAGGGAATTGCAGTGGACTCTGTGCACAGGATGCTGTTCTGGGCAGACAGTGGGAAAGACAAGATTGAGACATCTGGCCTGGATGGCAGTAAAAGAAGAGTACTGATTGACTCAGGTTTGGTCAATCCCAGAGCCATCATAGTAGACGCTAAGAGTGGAACTGTATTCTGGACAGACTGGAACCGTGATGCTCCCAAAATAGAAAGCTCATCACTGGAGGGACGTAACAGAAAAGTACTGGTGCAAGTGGGTCTCATGTTGCCCAATGCCTTGACATGGGACAATGCCACAAATCAACTGTGCTGGGCTGATGCAGGCACAAAGAAACTGGAGTGCATATCTCCGGATGGGACTCAGAGACGTGTGTTCCAGGATACTTTGAACTATCCGTTCAGTCTAGCCATCCATAACAAACACTTCTATTACACCGACTGGGAGAGAGATGGGATACTGGTGATTGACCAAAGCACAGGGAAAAACACAGATTATCTGCCCATTCAGCAGTCACACTTATATGGGATCACATTTATCCCATCACAATGTCTATAGAGACCCTGTGGATCTCTGCAGTTACAGAGACTGTAAGGATTTTtggaatataaataaatgacaacaaaacagaaacattgGTTTTGTATTattagttttgattttattttcggttcatttctatatttttaatGTGCTCTTGTCCACTAAGTTAGTCTCAAGTAACTTCTgcagttgtttttttgtgttataGTCTGAAGCAGATTTTTAGAaaaattttatcttttaattttaggtgttaaagttttattaatcttttgtgttttgttgtatTGCTTATAtctaaatacttaataattttcattcattcattttcttttcggcttagtccttttattaatctggggtcaccacaacagaatgaaccactaacttatccagcacgttttacgcagcggatgccctttcagccgcaacccatctctgggaaacatccacacacactaattcacacacatacact
>TCONS_00035363
AACTGCTGGATTTTAGCTGTACTTTTAACAAATGTTCGTTTTATGAAAGCGATTCAAAAGGAGAGACTTTTCCCTTTTGGAATATCTGAAGGGGATTCAGTTCTTCAGGAAGGTGACGATGAAGTGTCCGCAGCCCTGAAGATAAAAAAGCCATTACAGTTCTACGACATGCAGTTCAACATTCTTTATGTTTCCACAAATGGCTTTTTATCCCTTCAGCCTCCTCCTGAAGAGAGCCAGTATCTAGGAAGCACCTTTCCTCTGAGTTTCTCTGCCATCGCACCTTTCCTGACAGACTTTAGTTCAGGAAGAGGGAAAGGATCTGTGTTTTACCGTGTAGAGGAGTCAATAAATGTATTAAACCGGGCTTCTGACATGGTTCAGCATGGTTTCACTGGTTCTGCATTCAAGCCCAGCCACACAGTCATCGCCACATGGGACAACATCGAATGTGAAGTGGAAAAGCTCCTTCAGGTGACCAGTTTCCAGGTTGTGTTGGCTGGTAATAAATCAGATACATTTGCCTTGTTCCTGTATCCTGAGGATGAGCAGCAAATGCTAAATATCAGTCACAATTATGCTAACATGTCAAAAGGAGATGTCAAACTGCAGGCTGGTTTTAATAGAGGCGATACATCGACCACAGGAGAGCTGTTTTACAGTCTGCCTGGCTCTAAAGAGAACATCAACCTCTATAGGGAGGGGAACATGGGAATAAGCGGACTGTGGATTTTCCACATCGGATCCAGCCGCTTCCCTTTTCAGAATATAGTTCCTGCTTCTGTCACCAAGTCTGACTCTATGGGTTATAAAACCACTCAAAGAACCACAAAATCAAATACAACTGCAGATGAATCTGCTTCTGAGCCTCAGGTGGACAATCCAGCTTCACTTGTTCAACAGCCCTTAAAACCAAACCAAGAACTACAACAAGTCAATGTAACCAAAATGTGTGGTTTGCACCTGAGATTCTGCTCTGTGGATGGATACTGCACAGACTACCCAACTGGGCCATGCTGTTACTGCAGAACCGGCTACTATGGCAATGGCAGACATTGTTTACCCATggGTATTTCTCAACCTTTGAGTGGAAAGCTGAGTGGCCATGTTTCTGTTGGGGGCACTAAAGTTCAGCTAAACAGTGTGGACCTCCATGGCTTTGCGGTGGTGGGAGAAGGTCGTGTGTATGTCTCCATCAGTCCTGTCCCAGCTAGGGTGGGCTGGGCTCTGATGGCTGTGGGCCCGCTGGTCTCCACATTTGGCTGGCTCTTTGCTCTTGAGCTCCAGAACCATCCAAATGGCTTCAGCATAACTGGAGCTGAGTTTTTCTACAAAGCAGAGCTGGTGTTCAGCCCACAAGGACAGCGTGTTGTCATTATTCAAGAGGCTCAAGGAATGGATTCATTCAACCACTTGAATTTTGACATTAACATCATTGGAGATTTACCTAGCATTCCCAGTGGAGCCAAAGTTCATATTCTGCCATATACAGAGACCTATCACTACAACCATTCAGTGTTGACATCATCTTCACTGCGGGAGTACATGGTGGTGTCAGAAAATGGTGGATCTGAGACGTTGTCCTACCTACTACAGCAGAACATGAGTTTCAGTGGATGTGCACATGATCCCAGGACCACACCAGACTTTCAGCAGGTGAACGTGGAGCATCTGATGGTCATGTTCACAGAGGGAAACACACTCAGATATGCCATCAGCAACAGAGTGGGACCTGTAGGAGGTGAGCTACCTGGACTTGTAGAGTTGAATCCATGTTTAACTGGGAAGCACCATTGTGACCCGATGGCCCTCTGTCTGCCAGGGGACGGCACTCAGTATCTCTGTCAGTGTGCTATGGGCTACCAGGGCGATGGACAAAACTGCTACGATGTGGATGAGTGCGCGGAGGGGCTCAGTTCCTGTGGTCCTCATTCTGACTGTGTGAACATGCCGGGTGGCCATCACTGCCACTGTCAGTCTGGCTACGAGTTTGACCTCGATTTGCATGAGTGTGTGGataTCGATGAGTGTTTCGAGGAGCTCTGTCATCCGTTTGCTTCCTGCTCAAACACCCAGGGCTCGTTCCGCTGTCAATGCTGGCCTGAATACAAGGGCGATGGCTTCCTCTGCCAACCACCACcAAAAAGGCCCAAGCCTTCATTAACTGCATGccagcagcacagaaacagccTGCAGGAGAGTATGAGCATGTATCCAGCTCTGGAGGCTTTTGTTCCAAAGTGTGATGATAAAGGCCAGTACAAACCCCTGCAGTGTTTGGGCTCCACTGGACACTGCTGGTGTGTGGACAGCAGGGGGCAGGAGAGAGTGGGCACCAGGACAATGCCTGGCACAGCTCATGCCAACTGTGATCAACCAGCTGCTCTGGTTCCCCGTGTGGAGACTGTGTGTGAGCGTTGGAGGCTTGCACTCATGAGTCACTATAATGGTCAGCCGTCCTCTCAGGACTACATGCCCCTCTGTGACGCTCACGGAAATTTCCAGCCTGTGCAATGTTATGGCAACAGCGCTTTCTGCTGGTGTGTGGACCGACATGGTGTTGAAATTATTGGAACCCGGTCCAACGAGGATGTAAAGCCCCCCTGTATATCTGGTGATGCCGCCCCACTCAACAATGCACTGATGTATCCGGTTATAAGCTCCTCCCCTTCAGGCCCTGCTATACTTTACACACAAGCCTCACAGATTGGAGTCATTCCACTTGAAGAAACAGACCCAGTTCAGGAAAAGTCCACTGTGTTATTAGCCTTACAGGACTCGGTTGTGATTGGAATTGACTATGACTGTCAGGAGAACATCTTGTATTGGACAGATTTTGGACGACATACAATTTACAGAGCAGTTCTAATATCTGGGTCTGAACCAGAGGCTGTTATCAGCAaagACTTGATTCAGCCGGAGGGAATTGCAGTGGACTCTGTGCACAGGATGCTGTTCTGGGCAGACAGTGGGAAAGACAAGATTGAGACATCTGGCCTGGATGGCAGTAAAAGAAGAGTACTGATTGACTCAGGTTTGGTCAATCCCAGAGCCATCATAGTAGACGCTAAGAGTGGAACTGTATTCTGGACAGACTGGAACCGTGATGCTCCCAAAATAGAAAGCTCATCACTGGAGGGACGTAACAGAAAAGTACTGGTGCAAGTGGGTCTCATGTTGCCCAATGCCTTGACATGGGACAATGCCACAAATCAACTGTGCTGGGCTGATGCAGGCACAAAGAAACTGGAGTGCATATCTCCGGATGGGACTCAGAGACGTGTGTTCCAGGATACTTTGAACTATCCGTTCAGTCTAGCCATCCATAACAAACACTTCTATTACACCGACTGGGAGAGAGATGGGATACTGGTGATTGACCAAAGCACAGGGAAAAACACAGATTATCTGCCCATTCAGCAGTCACACTTATATGGGATCACATTTATCCCATCACAATGTCTATAGAGACCCTGTGGATCTCTGCAGTTACAGAGACTGTAAGGATTTTtggaatataaataaatgacaacaaaacagaaacat
>TCONS_00035364
ATTGGAACCCGGTCCAACGAGGATGTAAAGCCCCCCTGTATATCTGGTGATGCCGCCCCACTCAACAATGCACTGATGTATCCGGTTATAAGCTCCTCCCCTTCAGGCCCTGCTATACTTTACACACAAGCCTCACAGATTGGAGTCATTCCACTTGAAGAAACAGACCCAGTTCAGGAAAAGTCCACTGTGTTATTAGCCTTACAGACTTGATTCAGCCGGAGGGAATTGCAGTGGACTCTGTGCACAGGATGCTGTTCTGGGCAGACAGTGGGAAAGACAAGATTGAGACATCTGGCCTGGATGGCAGTAAAAGAAGAGTACTGATTGACTCAGGTTTGGTCAATCCCAGAGCCATCATAGTAGACGCTAAGAGTGGAACTGTATTCTGGACAGACTGGAACCGTGATGCTCCCAAAATAGAAAGCTCATCACTGGAGGGACGTAACAGAAAAGTACTGGTGCAAGTGGGTCTCATGTTGCCCAATGCCTTGACATGGGACAATGCCACAAATCAACTGTGCTGGGCTGATGCAGGCACAAAGAAACTGGAGTGCATATCTCCGGATGGGACTCAGAGACGTGTGTTCCAGGATACTTTGAACTATCCGTTCAGTCTAGCCATCCATAACAAACACTTCTATTACACCGACTGGGAGAGAGATGGGATACTGGTGATTGACCAAAGCACAGGGAAAAACACAGATTATCTGCCCATTCAGCAGTCACACTTATATGGGATCACATTTATCCCATCACAATGTCTAT

Function

symbol description
nid2b Predicted to enable calcium ion binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane and extracellular space. Is expressed in head. Orthologous to human NID2 (nidogen 2).

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005604 basement membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-143 Predicted to enable calcium ion binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane and extracellular space. Is expressed in head. Orthologous to human NID2 (nidogen 2).

Ensembl:

ensembl_id ENSDARG00000009471

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035362 False 2570 mRNA 0.47 12 9643499 9658405
TCONS_00035363 False 3546 mRNA 0.48 19 9643884 9674877
TCONS_00035364 True 768 nonsense_mediated_decay 0.48 6 9644065 9651062

Neighbor

gene id symbol gene type direction distance location
XLOC_017921 zfp36l1b coding downstream 63053 9575374 ~ 9580446 (-)
XLOC_017920 crip2l coding downstream 181050 9428965 ~ 9462449 (-)
XLOC_017919 rdh14b coding downstream 215478 9421448 ~ 9428021 (-)
XLOC_017918 syt14b coding downstream 365247 9241794 ~ 9278252 (-)
XLOC_017917 ylpm1 coding downstream 443778 9172301 ~ 9199721 (-)
XLOC_017923 si:dkey-63j12.4 coding upstream 76866 9751743 ~ 9760424 (-)
XLOC_017924 cgrrf1 coding upstream 101513 9776390 ~ 9780917 (-)
XLOC_017925 AL645822.1 coding upstream 231391 9906268 ~ 9906384 (-)
XLOC_017926 gjd2b coding upstream 283629 9958506 ~ 9963713 (-)
XLOC_017927 ACTC1 coding upstream 295909 9970786 ~ 9980318 (-)
XLOC_017928 CU539064.1 misc upstream 378528 10053405 ~ 10053701 (-)
XLOC_017915 CR388209.1 non-coding downstream 706495 8936903 ~ 8937004 (-)
XLOC_017914 CR388209.2 non-coding downstream 808405 8794502 ~ 8835094 (-)
XLOC_017913 NA non-coding downstream 1200074 8122693 ~ 8443425 (-)
XLOC_017909 NA non-coding downstream 1690317 7951782 ~ 7953182 (-)
XLOC_017907 NA non-coding downstream 2004847 7612155 ~ 7638652 (-)
XLOC_017930 NA non-coding upstream 402280 10077157 ~ 10078215 (-)
XLOC_017933 NA non-coding upstream 672906 10347783 ~ 10422813 (-)
XLOC_017935 NA non-coding upstream 1304581 10979458 ~ 10992289 (-)
XLOC_017936 NA non-coding upstream 1336320 11011197 ~ 11016927 (-)

Expression


Co-expression Network