XLOC_017923 (si:dkey-63j12.4)


Basic Information

Item Value
gene id XLOC_017923
gene name si:dkey-63j12.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9751743 ~ 9760424 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035365
ttttaggtgtTTTATGGTTGATAAAGACCAGGCTGAAGTCAATGCCATCCGTAAGGTGTTCAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAACGCAAGCAGTAACTCGTTGGCTGTCAATATCTGAATCTGGTGTGAATGGACCTGAAAAGACAGATTCAAGAGCGCACATCATACAGTTTATGTCAGAGATGAAATGCTGTTCAAAGGCACAAGAATTTAAGGAAAAGGCTGAGATGTTTCACTGCCAGTTTAGGAACTTCAAATATGTCTGCAAGTACTTCAGGAACAACTGGGAGACAATTGGTCATCTGTGGTCTAACTTTGGAAGATGCTATAAACAGAGACTCTGACACAAACAGGGTGACTGGTCTGAAATACGCGATAAACCCCCATGAAAAACGcaagtgttggcaggtgtgctcaCCAGTTTAATATTTGATCTGCTATAGTTAGAAATAAGACTATTATATCTTTTAAacgtaacgcctgtttcacaccgcaagcgtcagcggcgcgtgttTTTTTggcatccatgttaacagattagaacTTTCTTACCGCACGCAGCAGCGTGTCAGTGAGCCGTGAGcatcgctgaagcagcagtgcagcgatagcgctgctcacgctcaattaaagtgacagtgcattgataatgacctaaatacattgaataacagtaaaaagtaacaattttacccaataaatgtcaATAATATAAACTGATTTacatatagtcaatcaaatgaacttaaactaataaaaactgcaacaaacctTTATTTCGGCtcgaactacaaaaccaatagTAAAACagttttagtatcagttttgttGGAGAGGGGAAGTGATTTACGGGAATTGTAGTCCATAGCAAAgcgtattgtgggtagtgtagttcgacacccatgctggatgatgtgaactCACTGTGTGCTGTGCTGCTTAAGCAGAGGAAGAAAGCTTTATTCGGCTTTGCTTTGTTCGCTCAAGTTATTTCAcctgggagctgtttgcactgtgaacctgacaacacgaaaataagtaaaagaagggcATGCATTGA
>TCONS_00035366
acacacccacccacacacaggCAACTGCCATTTTCACCAGTGAAGAGGACAGGTGAAGAGGACAAGTGAAGAGgtgtTTTATGGTTGATAAAGACCAGGCTGAAGTCAATGCCATCCGTAAGGTGTTCAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAACGCAAGCAGTAACTCGTTGGCTGTCAATATCTGAATCTGGTGTGAATGGACCTGAAAAGACAGATTCAAGAGCGCACATCATACAGTTTATGTCAGAGATGAAATGCTGTTCAAAGGCACAAGAATTTAAGGAAAAGGCTGAGATGTTTCACTGCCAGTTTAGGAACTTCAAATATGTCTGCAAGTACTTCAGGAACAACTGGGAGACAATTGGTCATCTGTGGTCTAACTTTGGAAGATGCTATAAACAGAGACTCTGACACAAACAGGGTGACTGGTCTGAAATACGCGATAAACCCCCATGAAAAACGcaagtgttggcaggtgtgctcaCCAG
>TCONS_00035367
acacacccacccacacacaggCAACTGCCATTTTCACCAGTGAAGAGGACAGGTGAAGAGGACAAGTGAAGAGGCACAAGAATTTAAGGAAAAGGCTGAGATGTTTCACTGCCAGTTTAGGAACTTCAAATATGTCTGCAAGTAC
>TCONS_00035368
aggtgtTTTATGGTTGATAAAGACCAGGCTGAAGTCAATGCCATCCGTAAGGTGTTCAACGAGTCAGACATTCTCCTTTGTTGGTACCATGTAACGCAAGCAGTAACTCGTTGGCTGTCAATATCTGAATCTGGTGTGAATGGACCTGAAAAGACAGATTCAAGAGCGCACATCATACAGTTTATGTCAGAGATGAAATGCTGTTCAAAGGTGTGTTGCTAtttgttttagggtgctttcacacctatacttttgtttcagaacctgtcttgtttgcccagttagcgcggttcgtttggcatatgtgaacaaggCAATTGCGCTCTAttccacgccaaagtaatcgctccgagaccgcctgagtgaggtagtctcggcttgattgaaacgaaccctggagtggttcgtttgcagtgagaaagcgatccgatccgagcacggttattacagtgttttatggatatgtgataggcatacggctatatgaagagagaattatgagtagggtgggaagtttcgcaagtctccggatgcccgaaAACGAGTGATGACCTCCCCGTAATCTCGCATcaccctcccggtcctcaaataggcatcgtcgcgcacccttctcacccctccccaccgcatctctcctcagacacgtcgcgcgtgcGCGCCtcgtcaatcaccaccaaaccaccacctccccctgacagctgagcagaaCGCTGCAAAAAAAACCCTggcactctgaccaatgtgaggagagtttactcgcacttGACTTGtattagctcttttggtccgattagaaattTTGCAGTctgaaagtgaaccgctccaagagcaaagagcaacaatgttaacatttttaatctCTTTTTCGGAACAACtaaatcaattcacaggtgtgaaagcacccttatagtACAATTGTATGTTCTAATGTGTCATTCTACTTTGGTAACAAGCTTGTAACATGCATTATTAATATGTGAAAAAATTATGTTAATGACAGCTAATATAAAATGGTAACCACA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-17 No description available

Ensembl:

ensembl_id ENSDARG00000089556

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035365 False 1074 mRNA 0.41 3 9751743 9755550
TCONS_00035366 False 502 mRNA 0.44 4 9752382 9760424
TCONS_00035367 False 145 processed_transcript 0.46 2 9752531 9760424
TCONS_00035368 True 1022 mRNA 0.45 2 9754072 9755546

Neighbor

gene id symbol gene type direction distance location
XLOC_017922 nid2b coding downstream 76866 9643499 ~ 9674877 (-)
XLOC_017921 zfp36l1b coding downstream 171297 9575374 ~ 9580446 (-)
XLOC_017920 crip2l coding downstream 289294 9428965 ~ 9462449 (-)
XLOC_017919 rdh14b coding downstream 323722 9421448 ~ 9428021 (-)
XLOC_017918 syt14b coding downstream 473491 9241794 ~ 9278252 (-)
XLOC_017924 cgrrf1 coding upstream 15966 9776390 ~ 9780917 (-)
XLOC_017925 AL645822.1 coding upstream 145844 9906268 ~ 9906384 (-)
XLOC_017926 gjd2b coding upstream 198082 9958506 ~ 9963713 (-)
XLOC_017927 ACTC1 coding upstream 210362 9970786 ~ 9980318 (-)
XLOC_017929 znf770 coding upstream 297326 10057750 ~ 10065130 (-)
XLOC_017928 CU539064.1 misc upstream 292981 10053405 ~ 10053701 (-)
XLOC_017915 CR388209.1 non-coding downstream 814739 8936903 ~ 8937004 (-)
XLOC_017914 CR388209.2 non-coding downstream 916649 8794502 ~ 8835094 (-)
XLOC_017913 NA non-coding downstream 1308318 8122693 ~ 8443425 (-)
XLOC_017909 NA non-coding downstream 1798561 7951782 ~ 7953182 (-)
XLOC_017907 NA non-coding downstream 2113091 7612155 ~ 7638652 (-)
XLOC_017930 NA non-coding upstream 316733 10077157 ~ 10078215 (-)
XLOC_017933 NA non-coding upstream 587359 10347783 ~ 10422813 (-)
XLOC_017935 NA non-coding upstream 1219034 10979458 ~ 10992289 (-)
XLOC_017936 NA non-coding upstream 1250773 11011197 ~ 11016927 (-)

Expression


Co-expression Network