XLOC_017924 (cgrrf1)


Basic Information

Item Value
gene id XLOC_017924
gene name cgrrf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9776390 ~ 9780917 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035369
AGCGGCTGTCACAACCGGAAGTTTACGTTGGTGATTCCTGCAGGGTGACAGACAGACGCAAAGCAAGACAAGACTCAAAGCAACCGCggtttaataaaagaaaacagtATTTATTCGCACCgtattaatgtaacattttaagcaTGGCCGCGGAGTTTTTAGTGATGTTGTATGAATACTCTCCTCTCTTTTATATTGCTGTTATATCATTGTGTTTCATCATCACTGTGGCGGTTGTGTTGGGCTGGTTTGGGTTTGATGTTCCAGTCATTTTGCGCAGTTCAGATGAGTCTGAATCTGTCATTCCTGTGCCTGAGAGGAAGATGGTGCAGGTGATCAATCCCTTCGCCTTGGAGGTCAACTCTACTTCTGCTTCAGTAACCGAGGGTGTGAGTTTGCTGCCATGCTGTCTTGAAGACTGTGTCCTGAGCTGTTTCTGGGGCTGTGGAGTCCAGGCTCTTCAGACGGCCCTTCAGAGTCACCAGCTTGAGCTACGGTTCAACACTGCAGAACTGTTTCAAGAGGCTCTGGGGTCGAGTTGCCGTCACCACCAAACATTCAATGTACAGAAAGAAGAAAGGGAAGAATATTTCACCCAGATGCCACCAGCTCTTGAAGTAACAGATTTTGGGCTGCTTCCTCGGGATCGATACCCATTGGTGGCTGTGCTGACACTAGCCCATCCGGAAACCAGGGATAACTACAACATTGCATCTAGTGTGACTGTGATCCACGTTCCTGATGACAAGTACAGGCTCTCCACCAGAATCTTGTTCCAGTATCTGCTCACAGCACACGGGACCTTGTACGATCTGAagCCTCTATTCATGTCAGCAGACAACAGCAACTTATCTGGAAGCTCTGAACCTTCTCGCACTCAAGGGGCGGAGCTACAGCCAGAAAGCTCAGGTGAAAAGGGGGAGGAGTCTGATTCAGAAGGGGAGTGGCCTGATATTCAAGGGCGGGACTGTGTGGTGTGTCAGAATGCATCAATAAACAGAGTGCTTTTGCCATGCAGACATGCATGTGTATGTGACGGCTGTGTGTGCCGCTTCCAGCACTGTCCGATCTGCCGTGCGTTTGTCTTTGAATCATTTGCTCTGGCTAACCGACCTGCTcataatgatgatgaagatgaagaggaTTTTACCGATTGAAATTGTGTGAAGATGCAGTATTAAAAGCCTTAGCTTGGAAGCATAAACATGAAGAAGAAACATTGTAGCATCTCTATATTGTAAAGAGATGCAGGCAGCTGACCTGAAAATATGGACACCTCTAGCGTTATTTCAATTTTAGACTTCTTTGACCTGAGTGTGCTTGTGAAATGTGCTTAAGATAGagattttaagctgtatagtttatttatttatttttaatatatatatggtAAACTAACAAA
>TCONS_00035370
GACAGACGCAAAGCAAGACAAGACTCAAAGCAACCGCggtttaataaaagaaaacagtATTTATTCGCACCgtattaatgtaacattttaagcaTGGCCGCGGAGTTTTTAGTGATGTTGTATGAATACTCTCCTCTCTTTTATATTGCTGTTATATCATTGTGTTTCATCATCACTGTGGCGGTTGTGTTGGGCTGGTTTGGGTTTGATGTTCCAGTCATTTTGCGCAGTTCAGATGAGTCTGAATCTGTCATTCCTGTGCCTGAGAGGAAGATGGTGCAGGTGATCAATCCCTTCGCCTTGGAGGTCAACTCTACTTCTGCTTCAGTAACCGAGGGTGTGAGTTTGCTGCCATGCTGTCTTGAAGACTGTGTCCTGAGCTGTTTCTGGGGCTGTGGAGTCCAGGCTCTTCAGACGGCCCTTCAGAGTCACCAGCTTGAGCTACGGTTCAACACTGCAGAACTGTTTCAAGAGGCTCTGGGGTCGAGTTGCCGTCACCACCAAACATTCAAAAAGAAGAAAGGGAAGAATATTTCACCCAGATGCCACCAGCTCTTGAAGTAACAGATTTTGGGCTGCTTCCTCGGGATCGATACCCATTGGTGGCTGTGCTGACACTAGCCCATCCGGAAACCAGGGATAACTACAACATTGCATCTAGTGTGACTGTGATCCACGTTCCTGATGACAAGTACAGGCTCTCCACCAGAATCTTGTTCCAGTATCTGCTCACAGCACACGGGACCTTGTACGATCTGAag

Function

symbol description
cgrrf1 Predicted to enable metal ion binding activity. Predicted to be involved in negative regulation of cell growth. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CGRRF1 (cell growth regulator with ring finger domain 1).

GO:

id name namespace
GO:0030308 negative regulation of cell growth biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-100 Predicted to enable metal ion binding activity. Predicted to be involved in negative regulation of cell growth. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CGRRF1 (cell growth regulator with ring finger domain 1).

Ensembl:

ensembl_id ENSDARG00000037040

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035369 False 1402 mRNA 0.45 6 9776390 9780917
TCONS_00035370 True 761 nonsense_mediated_decay 0.47 5 9777179 9780867

Neighbor

gene id symbol gene type direction distance location
XLOC_017923 si:dkey-63j12.4 coding downstream 15966 9751743 ~ 9760424 (-)
XLOC_017922 nid2b coding downstream 101513 9643499 ~ 9674877 (-)
XLOC_017921 zfp36l1b coding downstream 195944 9575374 ~ 9580446 (-)
XLOC_017920 crip2l coding downstream 313941 9428965 ~ 9462449 (-)
XLOC_017919 rdh14b coding downstream 348369 9421448 ~ 9428021 (-)
XLOC_017925 AL645822.1 coding upstream 125351 9906268 ~ 9906384 (-)
XLOC_017926 gjd2b coding upstream 177589 9958506 ~ 9963713 (-)
XLOC_017927 ACTC1 coding upstream 189869 9970786 ~ 9980318 (-)
XLOC_017929 znf770 coding upstream 276833 10057750 ~ 10065130 (-)
XLOC_017930 NA coding upstream 296240 10077157 ~ 10078215 (-)
XLOC_017928 CU539064.1 misc upstream 272488 10053405 ~ 10053701 (-)
XLOC_017915 CR388209.1 non-coding downstream 839386 8936903 ~ 8937004 (-)
XLOC_017914 CR388209.2 non-coding downstream 941296 8794502 ~ 8835094 (-)
XLOC_017913 NA non-coding downstream 1332965 8122693 ~ 8443425 (-)
XLOC_017909 NA non-coding downstream 1823208 7951782 ~ 7953182 (-)
XLOC_017907 NA non-coding downstream 2137738 7612155 ~ 7638652 (-)
XLOC_017933 NA non-coding upstream 566866 10347783 ~ 10422813 (-)
XLOC_017935 NA non-coding upstream 1198541 10979458 ~ 10992289 (-)
XLOC_017936 NA non-coding upstream 1230280 11011197 ~ 11016927 (-)

Expression


Co-expression Network