XLOC_017936


Basic Information

Item Value
gene id XLOC_017936
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 11011197 ~ 11016927 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036800
TTTCACTTATCAGCACCATTGTAGTAAATGAAGCCTAAGCAAAGAGAGAGTGTTTGGCTCTTCTCTCTTAATTCAGCGAGAACAGTCAGTCAAGAAGAAAAATGTTCTTTGCAGGTAAACAAAGTGAAAGTGGGAGTGATTGCGTGATGAAGAACACTGACACTAACTGACACAGGACCAGTCCTACAGAGTCTGTTAACAGAGTGAAAAGCGGGAGTGATCGGGGTACGGAAGAATGCCCAGAAAGAACGGCACTAAAGTAACAGACCTGTTAAATATCCGTGTCTGCATGGGACGCTTTTGGGTCTGGACAGGGTGATCTAGGTTATCTTTGCAACAACAATGAAAAGGGGCATGCATTGTTTTTGTGTCTGTCTGAATTTATAATAAATGTCTGCTGAAACACTGGCAAC
>TCONS_00036801
GAACAGGTAGACATGTGAACCAGGATTGTTTGGGTTTTTCAAAGCCTTGTCGAGGAACATGTGCGTTCTACATTTCATTCAGGACCAGTCCTACAGAGTCTGTTAACAGAGTGAAAAGCGGGAGTGATCGGGGTACGGAAGAATGCCCAGAAAGAACGGCACTAAAGTAACAGACCTGTTAAATATCCGTGTCTGCATGGGACGCTTTTGGGTCTGGACAGGGTGATCTAGGTTATCTTTGCAACAACAATGAAAAGGGGCATGCATTGTTTTTGTGTCTGTCTGAATTTATAATAAATGTCTGCTGAAACACTGGCAAC
>TCONS_00036802
AGCAAGTGAACAGGTAGACATGTGAACCAGGATTGTTTGGGTTTTTCAAAGCCTTGTCGAGGAACATGTGCGTTCTACATTTCATTGTAAACAAAGTGAAAGTGGGAGTGATTGCGTGATGAAGAACACTGACACTAACTGACAGTAGGGATGAAACAGTTCAATCTACTCGTCTTTTTCAGGACCAGTCCTACAGAGTCTGTTAACAGAGTGAAAAGCGGGAGTGATCGGGGTACGGAAGAATGCCCAGAAAGAACGGCACTAAAGTAACAGACCTGTTAAATATCCGTGTCTGCATGGGACGCTTTTGGGTCTGGACAGGGTGATCTAGGTTATCTTTGCAACAACAATGAAAAGGGGCATGCATTGTTTTTGTGTCTGTCTGAATTTATAATAAATGTCTGCTGAAACACTGGCAAC
>TCONS_00036803
GAACAGGTAGACATGTGAACCAGGATTGTTTGGGTTTTTCAAAGCCTTGTCGAGGAACATGTGCGTTCTACATTTCATTCAGGACCAGTCCTACAGAGTCTGTTAACAGAGTGAAAAGCGGGAGTGATCGGGGTACGGAAGAATGCCCAGAAAGAACGGCACTAAAGTAACAGACCTGTTAAATATCCGTGTCTGCATGGGACGCTTTTGGGTCTGGACAGGGTGATCTAGGTTATCTTTGCAACAACAATGAAAAGGGGCATGCATTGTTTTTGTGTCTGTCTGAATTTATAATAAATGTCTGCTGAAACACTGGCAAC
>TCONS_00036805
AGCAAGTGAACAGGTAGACATGTGAACCAGGATTGTTTGGGTTTTTCAAAGCCTTGTCGAGGAACATGTGCGTTCTACATTTCATTGTAAACAAAGTGAAAGTGGGAGTGATTGCGTGATGAAGAACACTGACACTAACTGACAGTAGGGATGAAACAGTTCAATCTACTCGTCTTTTTCAGGACCAGTCCTACAGAGTCTGTTAACAGAGTGAAAAGCGGGAGTGATCGGGGTACGGAAGAATGCCCAGAAAGAACGGCACTAAAGTAACAGACCTGTTAAATATCCGTGTCTGCATGGGACGCTTTTGGGTCTGGACAGGGTGATCTAGGTTATCTTTGCAACAACAATGAAAAGGGGCATGCATTGTTTTTGTGTCTGTCTGAATTTATAATAAATGTCTGCTGAAACACTGGCAAC
>TCONS_00036804
AGCAAGTGAACAGGTAGACATGTGAACCAGGATTGTTTGGGTTTTTCAAAGCCTTGTCGAGGAACATGTGCGTTCTACATTTCATTGTAAACAAAGTGAAAGTGGGAGTGATTGCGTGATGAAGAACACTGACACTAACTGACAGTAGGGATGAAACAGTTCAATCTACTCGTCTTTTTGACCAGTCCTACAGAGTCTGTTAACAGAGTGAAAAGCGGGAGTGATCGGGGTACGGAAGAATGCCCAGAAAGAACGGCACTAAAGTAACAGACCTGTTAAATATCCGTGTCTGCATGGGACGCTTTTGGGTCTGGACAGGGTGATCTAGGTTATCTTTGCAACAACAATGAAAAGGGGCATGCATTGTTTTTGTGTCTGTCTGAATTTATAATAAATGTCTGCTGAAACACTGGCAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036800 False 413 lncRNA 0.43 2 11011197 11012011
TCONS_00036801 False 320 lncRNA 0.44 2 11011197 11013583
TCONS_00036802 False 420 lncRNA 0.43 3 11011197 11013590
TCONS_00036803 False 320 lncRNA 0.44 2 11011197 11016920
TCONS_00036805 False 420 lncRNA 0.43 3 11011197 11016927
TCONS_00036804 True 417 lncRNA 0.43 3 11011197 11016927

Neighbor

gene id symbol gene type direction distance location
XLOC_017935 NA coding downstream 18908 10979458 ~ 10992289 (-)
XLOC_017934 glrx5 coding downstream 523246 10484015 ~ 10487951 (-)
XLOC_017933 NA coding downstream 588384 10347783 ~ 10422813 (-)
XLOC_017932 BDKRB2 coding downstream 723041 10287061 ~ 10288156 (-)
XLOC_017931 meis2a coding downstream 890755 10098590 ~ 10120442 (-)
XLOC_017937 NA coding upstream 80466 11097393 ~ 11178022 (-)
XLOC_017938 NA coding upstream 607977 11624904 ~ 11629535 (-)
XLOC_017939 AL929349.1 coding upstream 612954 11629881 ~ 11634468 (-)
XLOC_017940 NA coding upstream 963851 11980778 ~ 11985215 (-)
XLOC_017941 BX322618.2 coding upstream 1223003 12239930 ~ 12243746 (-)
XLOC_017928 CU539064.1 misc downstream 957496 10053405 ~ 10053701 (-)
XLOC_017930 NA non-coding downstream 932982 10077157 ~ 10078215 (-)
XLOC_017925 AL645822.1 non-coding downstream 1104813 9906268 ~ 9906384 (-)
XLOC_017915 CR388209.1 non-coding downstream 2074193 8936903 ~ 8937004 (-)

Expression


Co-expression Network