XLOC_017949


Basic Information

Item Value
gene id XLOC_017949
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 12927182 ~ 12927955 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036457
actgagagagcctctttaaagaaaattgccactacaatATGCATTTCTCCTCTAGTTCCTACGTCACCGGCTAGCAGCCCCCACGGACCTTCTGAATGCAGTATTGAGGCACAACATTCACCAAGCCCTCAATGCTGGACTGATGACGGTGAATCCATCAATGGTTATGCCTCAACGCTAGGTGGCGGTCGCAGCCCTGTATATACACCATACCTGTCTTtagaagtagaagaagaagacGAGCTGGAAAAGCAGGAAGAAAACAATCATGTCGGAGACCACGTTTTCCAACAACAACAAGCCGATGATCTCACACAAACAGGATCCAACTCTATCGTCGAACCACATTTTAATCAACTAGTTCTGCAATATCTGGAGCGAAACCAGGTAAAAATTAATCAGATATCTGAATATGTTTTACACCAGCAGCGTGATATAGATGAACAACTAAGGGGTGCAAATCAGAAACTGACTGAGGTATTAAATTTACTGAACAAAGCTGAACGTTATCGCCGTGTTTTAGGTTCAATACTCTGTTCTATAAAAAATGCTTTGGTACGTTGATGATTGATCAATAacactgtttttatttactcattactAGATTTTGATTTATGTTAGCTAGCCTTATGTTTTAGTTATTCGTTTTGATCAAATGTGTTaagtttgtgtttaatatttgatCTCTTTT

Function

GO:

id name namespace
GO:0043034 costamere cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0070160 tight junction cellular_component
GO:0019887 protein kinase regulator activity molecular_function
GO:0019207 kinase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036457 True 691 lncRNA 0.39 2 12927182 12927955

Neighbor

gene id symbol gene type direction distance location
XLOC_017948 NA coding downstream 70136 12854967 ~ 12857046 (-)
XLOC_017947 NA coding downstream 72377 12853911 ~ 12854805 (-)
XLOC_017946 NA coding downstream 73821 12852898 ~ 12853361 (-)
XLOC_017945 NA coding downstream 74867 12850585 ~ 12852315 (-)
XLOC_017944 NA coding downstream 268087 12657817 ~ 12659095 (-)
XLOC_017950 si:dkey-54g2.2 coding upstream 8141 12936096 ~ 12936861 (-)
XLOC_017951 ints7 coding upstream 92534 13020489 ~ 13142357 (-)
XLOC_017952 BX510324.2 coding upstream 276111 13204066 ~ 13208752 (-)
XLOC_017953 NA coding upstream 381327 13309282 ~ 13313010 (-)
XLOC_017954 kcnk3a coding upstream 432701 13360656 ~ 13394780 (-)
XLOC_017928 CU539064.1 misc downstream 2873481 10053405 ~ 10053701 (-)
XLOC_017955 BX470123.1 non-coding upstream 441272 13369227 ~ 13369343 (-)
XLOC_017960 BX248403.1 non-coding upstream 890440 13818395 ~ 13818510 (-)
XLOC_017961 BX469908.1 non-coding upstream 966963 13894918 ~ 13896672 (-)

Expression


Co-expression Network