XLOC_017954 (kcnk3a)


Basic Information

Item Value
gene id XLOC_017954
gene name kcnk3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 13360656 ~ 13394780 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035394
ATGAAGAGACAAAACATCAGGACCCTCGTGTTGATCATCTGTACTTTTACTTATTTGCTCGTCGGAGCGGCGGTTTTTGATGCATTAGAGTCTAAGATGGAGATCACCCAGAAGAAGATCCTGGACGATCGGAAGCGAGAGCTGATGGACAAGTACAACTTGAGCAAAGTCAATTTCGACGAGCTGGAGCGGGTCGTGCTGCAGCTCAAGCCGCACAAGGCGGGGGTCCAATGGAGGTTCGCTGGGTCCTTCTATTTCGCCATCACGGTGATTACGACTATAGGATATGGTCATGCGGCCCCCAGCACGGATGGCGGGAAGGTGTTCTGCATGTTCTATGCTCTCCTGGGGATCCCGCTCACCCTGGTCATGTTCCAAAGTCTGGGTGAACGCATCAACACCTTCGTCAAATACCTGCTTCACCGTCTCAAAAAGTGTCTTGGTCTCCGTCACACAGAGGTCTCCATGGCCAACATGGTGTGCATTGGCTTGATATCCTGCATGAGCACCCTGTGTGTGGGGGCTGCGGCTTTCTCCCGCTACGAGGACTGGAGCTTCTTCCATGCATACTATTACTGCTTCATTACACTCACCACCATTGGTTTTGGGGACTACGTGGCCCTGCAGAAGGATAACGCTTTACAAACCAACCCCCAGTATGTAGCCTTTAGCTTCATGTACATCCTCACAGGCCTCACTGTCATTGGAGCCTTCTTGAACCTGGTGGTTCTGCGTTTTATGACCATGAATGCAGAAGATGAACGCCGTGACGCAGAACAGCGCACTTTGCTGTCCCGAAATAGGCAGAGCGGAGGCGCCGGAACCAATCATTGCATTTCCGACCCACCTTCTTCATCTACCGCGGGACACGGAGGAGGGTCCGGTAAGGGGTTGTGCAACGTCTACGCAGAAGTGCTCCATTTCCAGTCCATGTGCTCTTGTCTTTGGTACAAAAGCCAAGAGAAGATGCGCTACTCAATCCCCATGATTATCTCTCACGATCTGTCCACTTCAGACACCTACATGGAGCACAGCGAGACCTCAGATGTCCTTCACTCCAATGGCTGTGTGTGCAGTGCCTTGCAGGAGCACTCTGCCGCCAGTTCAGTGTACACAGGCCTGCTTAGCCCAGCACATTACCAAAGACTCTCCAAACGTCGCAGCTCTATTTAG

Function

symbol description
kcnk3a Predicted to enable potassium ion leak channel activity. Acts upstream of or within heart contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in atrium; cardiac ventricle; central nervous system; and heart. Human ortholog(s) of this gene implicated in primary pulmonary hypertension. Orthologous to human KCNK3 (potassium two pore domain channel subfamily K member 3).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0030322 stabilization of membrane potential biological_process
GO:0060047 heart contraction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022841 potassium ion leak channel activity molecular_function
GO:0005252 open rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-171 Predicted to enable potassium ion leak channel activity. Acts upstream of or within heart contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in atrium; cardiac ventricle; central nervous system; and heart. Human ortholog(s) of this gene implicated in primary pulmonary hypertension. Orthologous to human KCNK3 (potassium two pore domain channel subfamily K member 3).

Ensembl:

ensembl_id ENSDARG00000043466

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035394 True 1173 mRNA 0.52 2 13360656 13394780

Neighbor

gene id symbol gene type direction distance location
XLOC_017953 NA coding downstream 47646 13309282 ~ 13313010 (-)
XLOC_017952 BX510324.2 coding downstream 151904 13204066 ~ 13208752 (-)
XLOC_017951 ints7 coding downstream 218299 13020489 ~ 13142357 (-)
XLOC_017950 si:dkey-54g2.2 coding downstream 423795 12936096 ~ 12936861 (-)
XLOC_017949 NA coding downstream 432701 12927182 ~ 12927955 (-)
XLOC_017956 ezrb coding upstream 170151 13564931 ~ 13625588 (-)
XLOC_017957 rsph3 coding upstream 237746 13632526 ~ 13640598 (-)
XLOC_017958 TAGAP coding upstream 253207 13647987 ~ 13722514 (-)
XLOC_017959 opn8c coding upstream 355757 13750537 ~ 13774826 (-)
XLOC_017960 BX248403.1 coding upstream 423615 13818395 ~ 13818510 (-)
XLOC_017928 CU539064.1 misc downstream 3306955 10053405 ~ 10053701 (-)
XLOC_017948 NA non-coding downstream 503610 12854967 ~ 12857046 (-)
XLOC_017947 NA non-coding downstream 505851 12853911 ~ 12854805 (-)
XLOC_017961 BX469908.1 non-coding upstream 500138 13894918 ~ 13896672 (-)
XLOC_017962 NA non-coding upstream 603531 13998311 ~ 14001001 (-)
XLOC_017968 BX465225.1 non-coding upstream 1060128 14454908 ~ 14455626 (-)
XLOC_017973 BX470128.1 non-coding upstream 1478250 14873030 ~ 14873330 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_06286985_06304439 KCNK3A, KCNK3 coding CI01000051 null 6286985 ~ 6304439 (+)