Fish Transcriptome and Expression Database

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model fish

XLOC_017960 (BX248403.1)

Basic Information

Item	Value
gene id	XLOC_017960
gene name	BX248403.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007131.7
NCBI id	CM002904.2
chromosome length	55201332
location	13818395 ~ 13818510 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035409
gctGGCAGCTAACTTTTtgaaactctcacatggtcaccccacagaagctaaacagggctgcccctggtcagtacctggatgggagaccacatgagaaagctaggttgATGACAAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107164

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00035409	True	116	rRNA	0.50	1	13818395	13818510

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_017959	opn8c	coding	downstream	43569	13750537 ~ 13774826 (-)
XLOC_017958	TAGAP	coding	downstream	95881	13647987 ~ 13722514 (-)
XLOC_017957	rsph3	coding	downstream	177797	13632526 ~ 13640598 (-)
XLOC_017956	ezrb	coding	downstream	192807	13564931 ~ 13625588 (-)
XLOC_017954	kcnk3a	coding	downstream	423615	13360656 ~ 13394780 (-)
XLOC_017961	BX469908.1	coding	upstream	76408	13894918 ~ 13896672 (-)
XLOC_017962	NA	coding	upstream	179801	13998311 ~ 14001001 (-)
XLOC_017963	si:ch211-22i13.2	coding	upstream	184550	14003060 ~ 14012859 (-)
XLOC_017964	rhag	coding	upstream	196303	14014813 ~ 14054083 (-)
XLOC_017965	zpax2	coding	upstream	278348	14096858 ~ 14114151 (-)
XLOC_017928	CU539064.1	misc	downstream	3764694	10053405 ~ 10053701 (-)
XLOC_017955	BX470123.1	non-coding	downstream	449052	13369227 ~ 13369343 (-)
XLOC_017953	NA	non-coding	downstream	505385	13309282 ~ 13313010 (-)
XLOC_017952	BX510324.2	non-coding	downstream	609643	13204066 ~ 13208752 (-)
XLOC_017949	NA	non-coding	downstream	890440	12927182 ~ 12927955 (-)
XLOC_017948	NA	non-coding	downstream	961349	12854967 ~ 12857046 (-)
XLOC_017968	BX465225.1	non-coding	upstream	636398	14454908 ~ 14455626 (-)
XLOC_017973	BX470128.1	non-coding	upstream	1054520	14873030 ~ 14873330 (-)
XLOC_017980	NA	non-coding	upstream	1812728	15631238 ~ 15634114 (-)

Expression

Co-expression Network