XLOC_000018


Basic Information

Item Value
gene id XLOC_000018
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 355481 ~ 358562 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003003
cgtgttggcgtgggtttcctccgggtgctccggtttcctccacagtccaaacacatgcgctataggggaactgatcaactacactggccatagtgtatgagtgtgtgtatgggtgtttctcagtactggtttgcagctgaaagggcatccgctgtgtaaaacatatgctgaataagttggcggttcattctgctgtggcgacccctgataaataagggactaagccaaaagaaaattaaccCCCCCCACCAACCATCAGCATTAAAAATAAAGACTCAGACACAGTTTTGTTTTGCTATTGCCTTCATTTGGACAAAATAAACATGTGCACTGAGTGTGTTTCATTCACTGAATTGGTCTGAACACacatcactcactcacacacacacacacacacacactgctgtcccTTCTTAAGGTTCTGTGATCAAAGTTCCTTCAGTTACTGAATGGATCAAAAACAGGAGAAATACTCCTACATGGCATTATTGCATACTTCATACAGTGCACTGGGATTATTGTGAGGTTGTTTTTCGTCACATTCGCATTATTCTgtgatacaaaaataaataacaattcatTTGGGCAGGAAAACGGGGCTGTTCTTAAAATATAGGAGTATTGAAACGTGCATCACTGAACGACAGAAACACCAAACTAACATGAGGACAGACGACAACAGAAGAGTGAAGCTCCGGCTCATAGTTCACCCCAAATCAAGAGATGAAGGAAAGATGGCTTCAGTGTCTTTACCATTACTGTAAAATCATGGCCAATAATTAAAGTGGAGGgggacgcggtggcgcagtaggtagtgctgtcgcctcacagcaagaacaatAACCACAAtttctgacaataaccaaacagcTTAGAAtgcttatcagccaatcagaatccagcattcagcagcactgcaatataatatatatatacatatttttttcattatgtatgtatatatatatattcagtatgtatttgtgaatataaatatgaatattctgTTGATCTGAGGGTGAAATATGAGCAGGGAATATTCTAAACAGGTCTGATGAAGTTCATCCAAAGAAACACATCCATATTAAACACATCTATAAAGTATGATGGGATGGACTGTGagctattattgattattaatcgatgaaacacactcacacatgcactcacgcacacacacactcacagattcacgcacacattcacacacatgcaagcgcacaaaaacacacgcacatatacacatgcatgcacacgcacacacatgtacacactcacacacacatgcaagcgcacataaacacacacacacatttacacattcatgcacacacactcacacatgcaagcacacaaaaacccagacacacacatttacacatgcatgcacacactcatgTGCGCAGacacattcataaatgcacacacagacactcgcacatgcacgcacacacacacacacacacagtaagaaCAGTGTATCAATGCAGTATAAAGACAGACGCTGATGTGCTGCTGAACACAACTGGACCCACAAACCATAAGGAAGTGGTTTAGTGTCACTCCAcacgctgacacacacacacacacatttcccaCAATGCACCTCTTCTTCAGTCTCCCTGGAGACACACTACAGGATCAACACCGGACACGTCTGAACATTCCTGATATAAAGAAACAAATTCAGCCGCAGGTCCGTCATCCAGTCACTTATAAACCCTGTGATAGCAAAGGATTGTGGGATACGTCCTGGAGAACTCCGTTTATAAAACATCTAGAGGACGATTCCttcataaaatgttaaaatgcgcCGCGTGGCGAAGCCTCATCGTCCCAGAGCGCGCCATGTGTAAAGTGCGAGACCGCCGCCGCTCGGCTACTGCATTAAACACCACAGCTTTAGCTCGAGTCAGCGGACACTTCCTGTCAATCACACCTCATTTCCTGTGCAGAGCGAGGGGGTGTGGTCAGATGGAGTAGGTGGAGCTTTCTGACTGCTGGCGGATGTAGCACTGGAAGCTCTGATCACCGATTGGATGTTCCCTGGAAACACAAATATATGATGTGTCATAATCAGATGAAGAATTCCCTGCTTCTCACATGTGCAGTCAGTGATGCAGATAACACCGAGTCATGTGGAGGTGCGTTAGTGCCAATAAAAGAGGCAAtgtgtcttaaagggacagttcacccaaaaaccaTATCTGTGGTGGTTGAAATTACGGAAGTTTTCcaggataaataacaaaatgggacgGTGGCTGGAGATGGggctgaaatacgggagactcctgggaaaaacaggagtgttggcaggtatgctcacacacacacacacacacactctggactctgactacttcaatagaCTGAAATGCCCAGCACGGCATATCAACAATGTCTCGCGCTGAATGCTGTCGACCAAtcgctgtcatcggtccaatcagcgcagattagattgctgggataatcaggtaaaaataaatgcagattataagacaatgaaagtgttttatgAGCTTGCAAGCAGATCAGCCTGTTGCTGGacaccccaaaaccaaaatatgaccctttataAAACATAATGGGGGTTCTTTAACTTCCCTATAATTTTATTTGtcctactatggaattcaatggttagcagtttccaacattcttataaacatcttcttttgtgtttaactgtaAAAGAATTGTCGAAA
>TCONS_00003004
TTTTGCTATTGCCTTCATTTGGACAAAATAAACATGTGCACTGAGTGTGTTTCATTCACTGAATTGGTCTGAACACacatcactcactcacacacacacacacacacacactgctgtcccTTCTTAAGGTTCTGTGATCAAAGTTCCTTCAGTTACTGAATGGATCAAAAACAGGAGAAATACTCCTACATGGCATTATTGCATACTTCATACAGTGCACTGGGATTATTGTGAGGTTGTTTTTCGTCACATTCGCATTATTCTgtgatacaaaaataaataacaattcatTTGGGCAGGAAAACGGGGCTGTTCTTAAAATATAGGAGTATTGAAACGTGCATCACTGAACGACAGAAACACCAAACTAACATGAGGACAGACGACAACAGAAGAGTGAAGCTCCGGCTCATAGTTCACCCCAAATCAAGAGATGAAGGAAAGATGGCTTCAGTGTCTTTACCATTACTGTAAAATCATGGCCAATAATTAAAGTGGAGGgggacgcggtggcgcagtaggtagtgctgtcgcctcacagcaagaacaatAACCACAAtttctgacaataaccaaacagcTTAGAAtgcttatcagccaatcagaatccagcattcagcagcactgcaatataatatatatatacatatttttttcattatgtatgtatatatatatattcagtatgtatttgtgaatataaatatgaatattctgTTGATCTGAGGGTGAAATATGAGCAGGGAATATTCTAAACAGGTCTGATGAAGTTCATCCAAAGAAACACATCCATATTAAACACATCTATAAAGTATGATGGGATGGACTGTGagctattattgattattaatcgatgaaacacactcacacatgcactcacgcacacacacactcacagattcacgcacacattcacacacatgcaagcgcacaaaaacacacacacacacatttacacatgcatgcacacactcatgTGCGCAGacacattcataaatgcacacacagacactcgcacatgcacgcacacacacacacatacacacatctgcacgtacacacgcactcacacataaacaaacactcgCACACTCACAATCATAcacagaaccacacacacacacacacacagtaagaaCAGTGTATCAATGCAGTATAAAGACAGACGCTGATGTGCTGCTGAACACAACTGGACCCACAAACCATAAGGAAGTGGTTTAGTGTCACTCCAcacgctgacacacacacacacacatttcccaCAATGCACCTCTTCTTCAGTCTCCCTGGAGACACACTACAGGATCAACACCGGACACGTCTGAACATTCCTGATATAAAGAAACAAATTCAGCCGCAGGTCCGTCATCCAGTCACTTATAAACCCTGTGATAGCAAAGGATTGTGGGATACGTCCTGGAGAACTCCGTTTATAAAACATCTAGAGGACGATTCCttcataaaatgttaaaatgcgcCGCGTGGCGAAGCCTCATCGTCCCAGAGCGCGCCATGTGTAAAGTGCGAGACCGCCGCCGCTCGGCTACTGCATTAAACACCACAGCTTTAGCTCGAGTCAGCGGACACTTCCTGTCAATCACACCTCATTTCCTGTGCAGAGCGAGGGGGTGTGGTCAGATGGAGTAGGTGGAGCTTTCTGACTGCTGGCGGATGTAGCACTGGAAGCTCTGATCACCGATTGGATGTTCCCTGGAAACACAAATATATGATGTGTCATAATCAGATGAAGAATTCCCTGCTTCTCACATGTGCAGTCAGTGATGCAGATAACACCGAGTCATGTGGAGGTGCGTTAGTGCCAATAAAAGAGGCAAtgtgtcttaaagggacagttcacccaaaaaccaTATCTGTGGTGGTTGAAATTACGGAAGTTTTCcaggataaataacaaaatgggacgGTGGCTGGAGATGGggctgaaatacgggagactcctgggaaaaacaggagtgttggcaggtatgctcacacacacacacacacacactctggactctgactacttcaatagaCTGAAATGCCCAGCACGGCATATCAACAATGTCTCGCGCTGAATGCTGTCGACCAAtcgctgtcatcggtccaatcagcgcagattagattgctgggataatcaggtaaaaataaatgcagattataagacaatgaaagtgttttatgAGCTTGCAAGCAGATCAGCCTGTTGCTGGacaccccaaaaccaaaatatgaccctttataAAACATAATGGGGGTTCTTTAACTTCCCTATAATTTTATTTGtcctactatggaattcaatggttagcagtttccaacattcttataaacatcttcttttgtgtttaactgtaAAAGAATTGTCGAAA

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003003 False 2708 lncRNA 0.43 4 355481 358562
TCONS_00003004 True 2372 lncRNA 0.43 2 355771 358562

Neighbor

gene id symbol gene type direction distance location
XLOC_000017 cenpe coding upstream 59424 260039 ~ 296057 (+)
XLOC_000016 grk1a coding upstream 97343 245076 ~ 258138 (+)
XLOC_000015 tfdp1b coding upstream 111683 227241 ~ 243798 (+)
XLOC_000014 tmco3 coding upstream 130344 218524 ~ 225137 (+)
XLOC_000013 lamp1a coding upstream 173223 176583 ~ 182258 (+)
XLOC_000019 tpp2 coding downstream 60307 418869 ~ 443759 (+)
XLOC_000020 blzf1 coding downstream 135735 494297 ~ 505620 (+)
XLOC_000021 txnl4b coding downstream 155424 513986 ~ 518076 (+)
XLOC_000022 mrpl16 coding downstream 165826 524388 ~ 532429 (+)
XLOC_000023 mrpl39 coding downstream 174204 532766 ~ 591331 (+)
XLOC_000011 NA non-coding upstream 198199 156792 ~ 157282 (+)
XLOC_000024 dre-mir-155 non-coding downstream 217882 576444 ~ 576521 (+)
XLOC_000026 NA non-coding downstream 436414 794976 ~ 911551 (+)
XLOC_000028 NA non-coding downstream 657250 1015812 ~ 1033638 (+)
XLOC_000029 CR450787.2 non-coding downstream 860129 1218691 ~ 1218805 (+)
XLOC_000030 NA non-coding downstream 956727 1315289 ~ 1342237 (+)

Expression


Co-expression Network