XLOC_018097 (capn3b)


Basic Information

Item Value
gene id XLOC_018097
gene name capn3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25955118 ~ 26001290 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035663
GACTATAGCGCTGATAAAATTGACCTACTTCGGATACTTTTCATTCATCGCACTTGTGGCATCTGTCATCAAAGAGCAATATGGCAGAAGAACAGAAGTTTTCAGAAACATCTGTCCAACTCACTGAAGCTGCTCCGCAGACAGTGGGCAGTGGTTTTACAGCCCCTGGAAACATTTATTCAGCCATTTTGAGCCGTAATGAGGCTGTTAAAGATGCCAGGAGGCTCAAGGACTTTCAAGAGCTTAGAGATAAATATGTACGCAAGAAAGTGCTGTTTGAAGACCCCCTGTTCCCAGCTCAGGACTCCTCTCTCTTTTACAGTGAAAAGTTCCCCTTAAAGCTTGAATGGAAGCGTCCAATGGAAATTTGTAAAAATCCACAGTTCATTCTTGGAGGAGCCAATAGGACTGACATCTGCCAAGGAGACCTGGGAGACTGTTGGCTGTTGGCTGCCATAGCTTGCCTGACCCTGAATGATGTCATCCTGAAGAGGGTTGTTCCTCATGACCAAAGCTTCACTGAAAACTATGCTGGCATTTTCCATTTCCAGTTTTGGCGCTATGGTGAGTGGGTGGATGTGGTTATTGACGATCGACTTCCCACATACAAAAACAAGCTGGTCTTTACCAGGTCTGGACAGAATAATGAATTTTGGAGTGCTCTCATGGAAAAGGCATATGCAAAGTTACATGGCTCTTATGAAGCCTTAAAGGGAGGGAACTCATTGGAGGCTATGGAGGACTTCACTGGAGGTGTAACTGAGTTCTATGAGATTACAGAAGCCCCGAAAGAGTTGTACAACATCATGAGGAAGGCTCTGAAGAGAGGATCCCTCATGGGCTGTGCCATAGACACTTTGGTTCCAACTGCTCAAAGGACTAAAACTGCATCTGGACTTGTGCGAGGCCATGCATATTCAGTCACTGGAGTTGAGCAGGGTAAACGAAAGGATGGTAAAGACCTAATGATTCGTCTGGTTCGTGTGCGAGACCCCTGGGGTGTTGCCCCCCCTCCTGCCTGTAAATCTAATGACTGGGTTGAACTCGCCAAAACCGAACAAGACAAGCAGAGACTACAGCCTGGAGAGCAAGGGGAGTTCTGGATGTGCTTTGAGGAGTTTCAGAAGAACTTCACCAAACTGGAGATCTGCAATCTTACTCCAGACACTCTTGAGGATGACCAGATGTTCAAGTGGAATGTAACTGTACATGAGGGCCGATGGGTGAAAGGTTGTTCTGCTGGTGGCTGCAGAAACTTTCCAGACACATACTGGACAAACCCTCAATTCCGTCTGGTTCTTCTGGAGGCGGATGCTAAAGAGAAGACCTGCACAGTGGTGGTGGCACTAATGCAAAAGGGCAGGAGAGTAGAGCGCTGCTCTGGTGCAACCCTTCACAACATTGGGTTTGCCATCTACGAGGTTCCTAAGGAGATGAAGGGCAACCAACAACAACAGCTGTCGAAGGATTTCTTCCTTTATAATGCCTCCACAGCTCGCTCCAAGTCTTACGTCAACATACGTGAGGTGACGGAGCGATTCTGCCTGAAACCAGGCGAGTATGTCATCATTCCATCCACCTTCGATCCCCACAAGGAGAGCGAGTTTCTGCTCAGAGTCTTCTCTGAGAACAGAAGCACCTCAAAAGTTATAGATGCAGAGATTGAAGCGGAGCCCATGCAGGTAGATAACGTCAAgaaaaaaatcaagCCATTTGAGGAAGAGGAGACTGAAGAGGAAAAACAGTTCAGGGCCATCTTTCAGCAGATAGCTGGAGACGATATGGAGATTAATGCCAATGAGCTCAGGACTGTCCTAAACAGAGTGGTTGCCAAACATAAAGAGCTAAAAACAGAGGGCTTCAGTCTGGAAAGTTGCAGAAGTATGATCGCACTCCTGGATACTGATGGAACAGGTCATCTAAACCTGCAGGAGTTCAAACACTTATGGAACAAGATTAAACAGTGGAAGCTGGTGTTCACACGTTTCGACACTGACAAATCCAGCACAATCAGCAGTTTCGAGATGAGGAACGCACTTACTGAAGCAGGTTTTCAACTCAACAATCAGCTGTATGACATCATTTGTATGAGATATGCCAATGAACACATGGAGTTGGATTTCGACAGCTACATTAGCTGCTTAGTGCGACTGGAGGGAATGTTtaGGGCGTTCAGAGCCTTTGACAAGGATGGTGATGGACTTATCAAGCTCAATGTTTTTGAGTGGCTTCAACTGACAATGTACGCCTAAAGACATAAAAACAGAAGTCAGCCTGGCAACACTGAAGTTGGTAGAAATTACATATTGTGTGCATCCATTAAGTGGAgcagtgcagacaaagagctacGCCTGAATCAAAATAATTCTTCCACAAATGCTGGTCAAGTACAAACCAATTTGATTTTGAGTAACTGAATGGACCATGATGCCTCATTCAGATTGCCCCTTTAAAGTAAAATGTTGACACATCTAAACACATCATTCTTGTAAACTGTGTGTGCTTCTGGGCAACTGTAAATTAATAAACTGAATAAAGTGTTTCACCATTCTATTCCACTAGTTGCTCTTAGTATGTATTGCTGAGCATAAACATACAGCTCAAAATAGTGCAAAAAAATGTGCTCATGATTGCAAACAATGGATAAACACATGATTTACCTTAAGTGTAAACAAAGCGTCTTGTGCTAGAGTAGCAAAATCACACATAAAAACAACCAGAATATTTCTAGCTGTTTTCAGATTCCTAAGAAAATTACTATATTgaacaataaacaaacatattCAGCTTATGCTATTATTAAAGATTTGCTATTATGATGCTATTTTGAAACTGACCTTAATCTTAAGACATGTAACAGCTCTGCTTAGGAGCACAAACATGCTCTCATAGCTTGACATAATTCGGCAGATAAtcttaacaaaatatatattatttctcaaaactataTACAAAAAAGGTCATTCCTAGATTCTAAAGTGCTATAGCtattca
>TCONS_00035664
CTATAGCGCTGATAAAATTGACCTACTTCGGATACTTTTCATTCATCGCACTTGTGGCATCTGTCATCAAAGAGCAATATGGCAGAAGAACAGAAGTTTTCAGAAACATCTGTCCAACTCACTGAAGCTGCTCCGCAGACAGTGGGCAGTGGTTTTACAGCCCCTGGAAACATTTATTCAGCCATTTTGAGCCGTAATGAGGCTGTTAAAGATGCCAGGAGGCTCAAGGACTTTCAAGAGCTTAGAGATAAATATGTACGCAAGAAAGTGCTGTTTGAAGACCCCCTGTTCCCAGCTCAGGACTCCTCTCTCTTTTACAGTGAAAAGTTCCCCTTAAAGCTTGAATGGAAGCGTCCAATGGAAATTTGTAAAAATCCACAGTTCATTCTTGGAGGAGCCAATAGGACTGACATCTGCCAAGGAGACCTGGGAGACTGTTGGCTGTTGGCTGCCATAGCTTGCCTGACCCTGAATGATGTCATCCTGAAGAGGGTTGTTCCTCATGACCAAAGCTTCACTGAAAACTATGCTGGCATTTTCCATTTCCAGTTTTGGCGCTATGGTGAGTGGGTGGATGTGGTTATTGACGATCGACTTCCCACATACAAAAACAAGCTGGTCTTTACCAGGTCTGGACAGAATAATGAATTTTGGAGTGCTCTCATGGAAAAGGCATATGCAAAGTTACATGGCTCTTATGAAGCCTTAAAGGGAGGGAACTCATTGGAGGCTATGGAGGACTTCACTGGAGGTGTAACTGAGTTCTATGAGATTACAGAAGCCCCGAAAGAGTTGTACAACATCATGAGGAAGGCTCTGAAGAGAGGATCCCTCATGGGCTGTGCCATAGACACTTTGGTTCCAACTGCTCAAAGGACTAAAACTGCATCTGGACTTGTGCGAGGCCATGCATATTCAGTCACTGGAGTTGAGCAGGGTAAACGAAAGGATGGTAAAGACCTAATGATTCGTCTGGTTCGTGTGCGAGACCCCTGGGGTGTTGCCCCCCCTCCTGCCTGTAAATCTAATGACTGGGTTGAACTCGCCAAAACCGAACAAGACAAGCAGAGACTACAGCCTGGAGAGCAAGGGGAGTTCTGGATGTGCTTTGAGGAGTTTCAGAAGAACTTCACCAAACTGGAGATCTGCAATCTTACTCCAGACACTCTTGAGGATGACCAGATGTTCAAGTGGAATGTAACTGTACATGAGGGCCGATGGGTGAAAGGTTGTTCTGCTGGTGGCTGCAGAAACTTTCCAGACACATACTGGACAAACCCTCAATTCCGTCTGGTTCTTCTGGAGGCGGATGCTAAAGAGAAGACCTGCACAGTGGTGGTGGCACTAATGCAAAAGGGCAGGAGAGTAGAGCGCTGCTCTGGTGCAACCCTTCACAACATTGGGTTTGCCATCTACGAGATGAAGGGCAACCAACAACAACAGCTGTCGAAGGATTTCTTCCTTTATAATGCCTCCACAGCTCGCTCCAAGTCTTACGTCAACATACGTGAGGTGACGGAGCGATTCTGCCTGAAACCAGGCGAGTATGTCATCATTCCATCCACCTTCGATCCCCACAAGGAGAGCGAGTTTCTGCTCAGAGTCTTCTCTGAGAACAGAAGCACCTCAAAAGTTATAGATGCAGAGATTGAAGCGGAGCCCATGCAGGTAGATAACGTCAAgaaaaaaatcaagCCATTTGAGGAAGAGGAGACTGAAGAGGAAAAACAGTTCAGGGCCATCTTTCAGCAGATAGCTGGAGACGATATGGAGATTAATGCCAATGAGCTCAGGACTGTCCTAAACAGAGTGGTTGCCAAACATAAAGAGCTAAAAACAGAGGGCTTCAGTCTGGAAAGTTGCAGAAGTATGATCGCACTCCTGGATACTGATGGAACAGGTCATCTAAACCTGCAGGAGTTCAAACACTTATGGAACAAGATTAAACAGTGGAAGCTGGTGTTCACACGTTTCGACACTGACAAATCCAGCACAATCAGCAGTTTCGAGATGAGGAACGCACTTACTGAAGCAGGTTTTCAACTCAACAATCAGCTGTATGACATCATTTGTATGAGATATGCCAATGAACACATGGAGTTGGATTTCGACAGCTACATTAGCTGCTTAGTGCGACTGGAGGGAATGTTtaGGGCGTTCAGAGCCTTTGACAAGGATGGTGATGGACTTATCAAGCTCAATGTTTTTGAGTGGCTTCAACTGACAATGTACGCCTAAAGACATAAAAACAGAAGTCAGCCTGGCAACACTGAAGTTGGTAGAAATTACATATTGTGTGCATCCATTAAGTGGAgcagtgcagacaaagagctacGCCTGAATCAAAATAATTCTTCCACAAATGCTGGTCAAGTACAAACCAATTTGATTTTGAGTAACTGAATGGACCATGATGCCTCATTCAGATTGCCCCTTTAAAGTAAAATGTTGACACATCTAAACACATCATTCTTGTAAACTGTGTGTGCTTCTGGGCAACTGTAAATTAATAAACTGAATAAAGTGTTTCACCATTC

Function

symbol description
capn3b Enables peptidase activity. Involved in protein catabolic process. Predicted to be active in cytoplasm. Is expressed in brain; intestine; liver; and muscle. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy; autosomal recessive limb-girdle muscular dystrophy type 2A; and muscular dystrophy. Orthologous to human CAPN3 (calpain 3).

GO:

id name namespace
GO:1990092 calcium-dependent self proteolysis biological_process
GO:0030163 protein catabolic process biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0045214 sarcomere organization biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-149 Enables peptidase activity. Involved in protein catabolic process. Predicted to be active in cytoplasm. Is expressed in brain; intestine; liver; and muscle. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy; autosomal recessive limb-girdle muscular dystrophy type 2A; and muscular dystrophy. Orthologous to human CAPN3 (calpain 3).

Ensembl:

ensembl_id ENSDARG00000043035

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035663 False 2994 mRNA 0.43 21 25955118 26001290
TCONS_00035664 True 2537 mRNA 0.45 20 25955561 26001288

Neighbor

gene id symbol gene type direction distance location
XLOC_018096 churc1 coding downstream 20679 25929440 ~ 25934439 (-)
XLOC_018095 elmsan1a coding downstream 52977 25886491 ~ 25902141 (-)
XLOC_018094 exoc1 coding downstream 76511 25853012 ~ 25878607 (-)
XLOC_018093 chst14 coding downstream 206711 25739979 ~ 25748407 (-)
XLOC_018092 CR352243.2 coding downstream 242703 25710791 ~ 25712415 (-)
XLOC_018098 si:dkey-12h9.6 coding upstream 25228 26026518 ~ 26042070 (-)
XLOC_018099 gtf2h5 coding upstream 43963 26045253 ~ 26047787 (-)
XLOC_018100 serac1 coding upstream 47014 26048304 ~ 26060154 (-)
XLOC_018101 myct1a coding upstream 61229 26062519 ~ 26070949 (-)
XLOC_018102 BX470119.1 coding upstream 118049 26119339 ~ 26119459 (-)
XLOC_017928 CU539064.1 misc downstream 15901417 10053405 ~ 10053701 (-)
XLOC_018088 BX322665.2 non-coding downstream 349833 25600105 ~ 25605285 (-)
XLOC_018080 NA non-coding downstream 643664 25307795 ~ 25311454 (-)
XLOC_018078 NA non-coding downstream 1222809 24729131 ~ 24732309 (-)
XLOC_018077 NA non-coding downstream 1500189 24448007 ~ 24454929 (-)
XLOC_018103 BX470119.2 non-coding upstream 193436 26194726 ~ 26194841 (-)
XLOC_018107 NA non-coding upstream 444613 26445903 ~ 26458381 (-)
XLOC_018112 NA non-coding upstream 629780 26631070 ~ 26708526 (-)
XLOC_018116 BX248515.2 non-coding upstream 958243 26959533 ~ 26962756 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_04825112_04840389 CAPN3B coding CI01000325 null 4824953 ~ 4840620 (-)