XLOC_018098 (si:dkey-12h9.6)


Basic Information

Item Value
gene id XLOC_018098
gene name si:dkey-12h9.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26026518 ~ 26042070 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035665
GTTCTCCAGACAGCGCAGATGTACTTCCACGCTTTGCCTCTGTGTGAAGTTCTCGGGCGTGCGCACATCCACCTCCACTAACGCACAAAGCGCTTCTGCTCAGGTTACTGTAAATGAGACCTCCAGTCTTACAATTACCTGTTTAATGGACTAAATAGCCAGTAGGACCAGAAGCCATAATATGAAGAAACGCTACATGGATATAGGCAGGCTCCGGAAAATGAAAAAGATTAAACTCACTGAGAAGATTTCCGAAAGTGCATACTCTGTTCTGAAGTTCATGATCGTCTGGATGATGGTGCTGTTAGCTGACTTTGTTCTGGAGTTCAGACTGGAATACCTGTGGCCCTGTTGGCTCTTTCTAGGGACCGTCTACACCACATTCCACTGTCATGGACTGGCCATCTGTGTGGTTTTTGTGTGTGCTGCATTTACCCTGGACTTATTCTGTTTAGTTTTTGTACCCTTACACTGGCTGTTTTTTGCCGCCAGTACTTATGTCTTACTCAACTATATGTGGCATACAGAGAAAGGAATCTGTATGTCAACTGTGACATTATGGATCCTCTTAGTCTATATGGAGGCGTCTCTGCGCTTGAAAGAACTCAAAAGCCCTTATGCAAATCTGTCCCATCTATTTGCTGCACACTGCATTGGTTATCCGCTTGTGTATATGGGATTTGATGCAACCTGCTATTTCTCCAGCATGTTTAAGCTGCGCACTCAGAAATCTGCTCACAGTGAGAATGACCTCCATATGGATCTCCTGCAACAATCCCTACCTCCTTACATGCACCTCTACCCAAAATTGTGGATGGAAGATTCCAAATATAAGATGTCCAAATCCAGGCCAACGCAATACCAGTGTCCACCTGATACCACCACCTCAGAGGACAAACACAACATGGAAGACTGCCTTCAAATCCACAGACTTCCCTCCAGACCTGAAAAAGACCTAAATCCACAAACTCCAGCATCCAAGCACCGCGGAGGCGAAATTCATTTAGACTCCACATCCATCCTAGAAATGACTGAAAACCTACCTCAGGACGATCAGAGCAGCAAAGCTCTAAGATCCTCCAAGAGCTCTCTGCCTAAAGTGCAGCGAAGCTCAGTGAATGTTCCTAATGGCAAAGCCGAGAAGAGGCAGAAAAACCTCAAAGCCATCAACTCCACAGGGGAATCTGTTGAACGGTGCTCGTCAAACATCCCAACCCACAATCCTCCACCAAATCCTTCCAACCCACATGCTGAGCAGATGCTGAAGCTGGAACAGGAGCTGAGAAAGCTGAAGGGAGAGCTGCAGGCGAGCAGACAGAGCGAGCAAGAGCTGCGCAGTCACATTTGTAATCTCACCAACAGTGAACACAGTCTGCGGCCTGAAGTCTCTCTGCTCAGACATGCAAATGAACTGCTGCAGAACAAGATTCAGTGTCTGAGTAAATCCAGACAGAAGGACAAACAGAACTGTTCCTTGCTGGAAAAGAAAATCAGAATGGAAACAGACGCCCGAGTTGTGGTAGAAAAACAGCTCACAGAAGTCAGAGCCCAAAAATTTGATGAAGCAACGATTTTACTTCGGAGCGCATCACACAGGCAAGAACAAAGTGAAACTCAAATGTTGAGGAAAAAAGCTAAAGATCTAGACTCAGAGTACAAACAACTACAGCTGGAGTATCAGGGGAAAGAGAATCGAATGATAGCTCTAGAGAATGAAGTGGAGACTCTGCAGAGGAACAGATGCAGTGAGCAGGAGGCCGACGCTCTGCTCTCTGCTCTCTCCTCACTGCAGGACAAGGCTCAGCATCTCGAGTACAACCTGAGTGCAGAAACCCGGCTCAAACTAGACCTGTTCTCAGCCCTTGGAGACGCACGCAGACAGCTGGAGATAGCGCAAGTTAAAATACTGAAACAGGACCATGAGGTGAAGGAAATGAAGCAGAAGCTTGCTGAGGCGATGGCTGTGGCTCCAGGTATGTCCTATATGGCCCCGAGGTCCTCCATGCCTCAGTACCTCAAGTTCTTGAACTCTGAGCGCTACATGCTAAACCCCAGAGCGCTTATGTACCAGTGTCTGAAGAAGTAAGAGCGGCAGGGACAAATCCCATGGCTTTTCAATGATTGTTGTGACTCGACATTCCAAACATGAGGGCATCTCTGCTTCAAGGTTTGCCAGAAAACTTTGCCTTTTGACAATGCCAGCCGCCTCTGGTGAGTCTCCGGCTGTGTTTACTGAATTGAGCAGAGGCACTGAGGCCGCTTGTAGGTGACTTTGCTTCAAGCCAAGATTTAATCGAATCAAAGTTGACTGTAAATAAATTGTTGACCAGCGGATGACCATCGAATGCTGAGCAAACCACTGCGAGCGGCGCAAACCGCTCAAGATATCAGTATGAAAAAAACTTGATGAGGAGCACAGTTCGTCATGAGGACAGGATCTCCTGCAAAATGAAGAGGCTCTTCTTCAGCCATGACAATAACAGGCCAATGCCTCACTTGGTCATTCTGTGCCTCATTATTTATGTGAATTCAATTTATACAACAAGCCAATATCAAATGTAAGTCAGTATGTGAATATTCGAGTGCTTTGTACTGTTTTGTATTCTTTTTACATTACACAAGTTAAAACAGAATtgaacagcacacaaacacacacacacacacgcacacatacacacaaactaaGAAAAAAACGAAACAATATTTGTAGGTTTTCATGTTTCTGAAACCGTTGCCTTTTTTATGTAtcaatgggatgttttttatgaGAAGTTTATTTTTCTGCCTTGACATAACTTTTTTTTCCTAAACCAAAATTAAATAATGGTTTAATTTTGTAATAATACTTGTTGGTCTGCATGCCAATTTGTGTAAAATGATtgttttggacaaaaaaaaagaaaaaaaagaaaagattttgaTGTCTAATTGTGCTTTTGTGCAAGGGCTGTTTTCTTCCAATGATTCTGGGAGCAGTAATAAAGTCATTTACAATGATAAATGTgtattgtcttaaaatgtttttttagagacttaaaaggttagttcatctgtcatcatttgctcaccatcatttcattttttaaacctaTTAAGCTtttgtttatcttcagaacaaatattaatatattttaataacatccGAGAGGTTTCTGTCCCTCAATACAAAGTAATTCAAATAAAACTCAGAatgta
>TCONS_00035666
ATGATCGTCTGGATGATGGTGCTGTTAGCTGACTTTGTTCTGGAGTTCAGACTGGAATACCTGTGGCCCTGTTGGCTCTTTCTAGGGACCGTCTACACCACATTCCACTGTCATGGACTGGCCATCTGTGTGGTTTTTGTGTGTGCTGCATTTACCCTGGACTTATTCTGTTTAGTTTTTGTACCCTTACACTGGCTGTTTTTTGCCGCCAGTACTTATGTCTTACTCAACTATATGTGGCATACAGAGAAAGGAATCTGTATGTCAACTGTGACATTATGGATCCTCTTAGTCTATATGGAGGCGTCTCTGCGCTTGAAAGAACTCAAAAGCCCTTATGCAAATCTGTCCCATCTATTTGCTGCACACTGCATTGGTTATCCGCTTGTGTATATGGGATTTGATGCAACCTGCTATTTCTCCAGCATGTTTAAGCTGCGCACTCAGAAATCTGCTCACAGTGAGAATGACCTCCATATGGATCTCCTGCAACAATCCCTACCTCCTTACATGCACCTCTACCCAAAATTGTGGATGGAAGATTCCAAATATAAGATGTCCAAATCCAGGCCAACGCAATACCAGTGTCCACCTGATACCACCACCTCAGAGGACAAACACAACATGGAAGACTGCCTTCAAATCCACAGACTTCCCTCCAGACCTGAAAAAGACCTAAATCCACAAACTCCAGCATCCAAGCACCGCGGAGGCGAAATTCATTTAGACTCCACATCCATCCTAGAAATGACTGAAAACCTACCTCAGGACGATCAGAGCAGCAAAGCTCTAAGATCCTCCAAGAGCTCTCTGCCTAAAGTGCAGCGAAGCTCAGTGAATGTTCCTAATGGCAAAGCCGAGAAGAGGCAGAAAAACCTCAAAGCCATCAACTCCACAGGGGAATCTGTTGAACGGTGCTCGTCAAACATCCCAACCCACAATCCTCCACCAAATCCTTCCAACCCACATGCTGAGCAGATGCTGAAGCTGGAACAGGAGCTGAGAAAGCTGAAGGGAGAGCTGCAGGCGAGCAGACAGAGCGAGCAAGAGCTGCGCAGTCACATTTGTAATCTCACCAACAGTGAACACAGTCTGCGGCCTGAAGTCTCTCTGCTCAGACATGCAAATGAACTGCTGCAGAACAAGATTCAGTGTCTGAGTAAATCCAGACAGAAGGACAAACAGAACTGTTCCTTGCTGGAAAAGAAAATCAGAATGGAAACAGACGCCCGAGTTGTGGTAGAAAAACAGCTCACAGAAGTCAGAGCCCAAAAATTTGATGAAGCAACGATTTTACTTCGGAGCGCATCACACAGGCAAGAACAAAGTGAAACTCAAATGTTGAGGAAAAAAGCTAAAGATCTAGACTCAGAGTACAAACAACTACAGCTGGAGTATCAGGGGAAAGAGAATCGAATGATAGCTCTAGAGAATGAAGTGGAGACTCTGCAGAGGAACAGATGCAGTGAGCAGGAGGCCGACGCTCTGCTCTCTGCTCTCTCCTCACTGCAGGACAAGGCTCAGCATCTCGAGTACAACCTGAGTGCAGAAACCCGGCTCAAACTAGACCTGTTCTCAGCCCTTGGAGACGCACGCAGACAGCTGGAGATAGCGCAAGTTAAAATACTGAAACAGGACCATGAGGTGAAGGAAATGAAGCAGAAGCTTGCTGAGGCGATGGCTGTGGCTCCAGGTATGTCCTATATGGCCCCGAGGTCCTCCATGCCTCAGTACCTCAAGTTCTTGAACTCTGAGCGCTACATGCTAAACCCCAGAGCGCTTATGTACCAGTGTCTGAAGAAGTAA

Function

symbol description
si:dkey-12h9.6 Predicted to enable actin filament binding activity and microtubule binding activity. Predicted to be involved in chemotaxis and neuronal signal transduction. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear membrane and rough endoplasmic reticulum membrane.

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0023041 neuronal signal transduction biological_process
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0051015 actin filament binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-145 Predicted to enable actin filament binding activity and microtubule binding activity. Predicted to be involved in chemotaxis and neuronal signal transduction. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear membrane and rough endoplasmic reticulum membrane.

Ensembl:

ensembl_id ENSDARG00000056092

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035665 False 3195 mRNA 0.43 11 26026518 26042070
TCONS_00035666 True 1806 mRNA 0.47 10 26027627 26039841

Neighbor

gene id symbol gene type direction distance location
XLOC_018097 capn3b coding downstream 25228 25955118 ~ 26001290 (-)
XLOC_018096 churc1 coding downstream 92079 25929440 ~ 25934439 (-)
XLOC_018095 elmsan1a coding downstream 124377 25886491 ~ 25902141 (-)
XLOC_018094 exoc1 coding downstream 147911 25853012 ~ 25878607 (-)
XLOC_018093 chst14 coding downstream 278111 25739979 ~ 25748407 (-)
XLOC_018099 gtf2h5 coding upstream 3183 26045253 ~ 26047787 (-)
XLOC_018100 serac1 coding upstream 6234 26048304 ~ 26060154 (-)
XLOC_018101 myct1a coding upstream 20449 26062519 ~ 26070949 (-)
XLOC_018102 BX470119.1 coding upstream 77269 26119339 ~ 26119459 (-)
XLOC_018103 BX470119.2 coding upstream 152656 26194726 ~ 26194841 (-)
XLOC_017928 CU539064.1 misc downstream 15972817 10053405 ~ 10053701 (-)
XLOC_018092 CR352243.2 non-coding downstream 314103 25710791 ~ 25712415 (-)
XLOC_018088 BX322665.2 non-coding downstream 421233 25600105 ~ 25605285 (-)
XLOC_018080 NA non-coding downstream 715064 25307795 ~ 25311454 (-)
XLOC_018078 NA non-coding downstream 1294209 24729131 ~ 24732309 (-)
XLOC_018077 NA non-coding downstream 1571589 24448007 ~ 24454929 (-)
XLOC_018107 NA non-coding upstream 403833 26445903 ~ 26458381 (-)
XLOC_018112 NA non-coding upstream 589000 26631070 ~ 26708526 (-)
XLOC_018116 BX248515.2 non-coding upstream 917463 26959533 ~ 26962756 (-)

Expression


Co-expression Network