XLOC_018099 (gtf2h5)


Basic Information

Item Value
gene id XLOC_018099
gene name gtf2h5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26045253 ~ 26047787 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035667
GGTGAGTAGAGGAAAACCATTGTTTCTAAACGCTAAATAGTTTTCTGACACCAGTCACTGCAACAAAGTAAAGTGGCAAAAGACAATAAGAATGTTAGTGTGTATGTTTTAACGCTGTCTTTAAAGTATAGGTTTAAGAGctgtaaacaaaatgtaaaatatttgtaaggACTAACGTCATTCATGGTGGACGGCTTTGTTGCTATTTCGTTTTCTCTCATACAGAGCTTTTACTGTACCTTTACTGAAGCAGCAGTAAGTTACGTTAGTGTTAACACACCCCGTCCAAAATGGTCAACGTGTTGAAAGGAGTTCTCGTTGAATGTGATCCAGCTATGAAGCAGTTTCTACTATATCTGGATGAGACGTCAGCTTTGGGGAAGAAATTCATCATCCAGGATTTGGACGACACGCATGTTTTCATCTTAGCTGAAGTTGTGCAGATTCTCCAGGAGCGAGTAGGAGAACTGATGGACCAGAATTCATTTCCCATCACCCAGAAATAAACATCTGAACCTTGACAGCAAGACCCTTCAGTCTGTGGGAGCAGATGGATGTGGAGATTCTTTCAGCACAATTGCACAAacacagatgaagctgaaatataGAGACGATGACTGCCTACAGGGATGATGATGTGTATTCTCTTTGGTTTAGTTTGACTGCAAAGTTCTTTTATCTGAAAAAAGTATAACTttaaactgtttatgtttttaaagacatatgttTAAAAGACAGAGGCTGTCCTGTGTTTTGAaagtattgttttacatgcaaGATGGCATTGCCTACAAATAGTTATGTTTTACTGAAAGTATATGTCATACTGAATGCAGACGGGTGATGTCTGTGATTTAACTTCATGCATAATATGCTTAGTGTCAAATAAACAGAAGAATTCAACTAAAGTA
>TCONS_00035668
GTGGAGTTGACTGGTCCAATACTAGTCGAGCTTTTACTGTACCTTTACTGAAGCAGCAGTAAGTTACGTTAGTGTTAACACACCCCGTCCAAAATGGTCAACGTGTTGAAAGGAGTTCTCGTTGAATGTGATCCAGCTATGAAGCAGTTTCTACTATATCTGGATGAGACGTCAGCTTTGGGGAAGAAATTCATCATCCAGGATTTGGACGACACGCATGTTTTCATCTTAGCTGAAGTTGTGCAGATTCTCCAGGAGCGAGTAGGAGAACTGATGGACCAGAATTCATTTCCCATCACCCAGAAATAAACATCTGAACCTTGACAGCAAGACCCTTCAGTCTGTGGGAGCAGATGGATGTGGAGATTCTTTCAGCACAATTGCACAAacacagatgaagctgaaatataGAGACGATGACTGCCTACAGGGATGATGATGTGTATTCTCTTTGGTTTAGTTTGACTGCAAAGTTCTTTTATCTGAAAAAAGTATAACTttaaactgtttatgtttttaaagacatatgttTAAAAGACAGAGGCTGTCCTGTGTTTTGAaagtattgttttacatgcaaGATGGCATTGCCTACAAATAGTTATGTTTTACTGAAAGTATATGTCATACTGAATGCAGACGGGTGATGTCTGTGATTTAACTTCATGCATAATATGCTTAGTGTCAAATAAACAGAAGAATTCAACTAAAGTA
>TCONS_00035669
AATACTAGTCGGTGAGTAGAGGAAAACCATTGTTTCTAAACGCTAAATAGTTTTCTGACACCAGTCACTGCAACAAAGTAAAGTGGCAAAAGACAATAAGAATTGATCCAGCTATGAAGCAGTTTCTACTATATCTGGATGAGACGTCAGCTTTGGGGAAGAAATTCATCATCCAGGATTTGGACGACACGCATGTTTTCATCTTAGCTGAAGTTGTGCAGATTCTCCAGGAGCGAGTAGGAGAACTGATGGACCAGAATTCATTTCCCATCACCCAGAAATAAACATCTGAACCTTGACAGCAAGACCCTTCAGTCTGTGGGAGCAGATGGATGTGGAGATTCTTTCAGCACAATTGCACAAacacagatgaagctgaaatataGAGACGATGACTGCCTACAGGGATGATGATGTGTATTCTCTTTGGTTTAGTTTGACTGCAAAGTTCTTTTATCTGAAAAAAGTATAACTttaaactgtttatgtttttaaagacatatgttTAAAAGACAGAGGCTGTCCTGTGTTTTGAaagtattgttttacatgcaaGATGGCATTGCCTACAAATAGTTATGTTTTACTGAAAGTATATGTCATACTGAATGCAGACGGGTGATGTCTGTGATTTAACTTCATGCATAATATGCTTAGTGTCAAATAAACAGAAGAATTCAACTAAA
>TCONS_00035670
TCCAAGCCAGCAGAGGGTAGTGGAGTTGACTGGTCCAATACTAGTCGGTGAGTAGAGGAAAACCATTGTTTCTAAACGCTAAATAGTTTTCTGACACCAGTCACTGCAACAAAGTAAAGTGGCAAAAGACAATAAGAATAGCTTTTACTGTACCTTTACTGAAGCAGCAGTAAGTTACGTTAGTGTTAACACACCCCGTCCAAAATGGTCAACGTGTTGAAAGGAGTTCTCGTTGAATGTGATCCAGCTATGAAGCAGTTTCTACTATATCTGGATGAGACGTCAGCTTTGGGGAAGAAATTCATCATCCAGGATTTGGACGACACGCATGTTTTCATCTTAGCTGAAGTTGTGCAGATTCTCCAGGAGCGAGTAGGAGAACTGATGGACCAGAATTCATTTCCCATCACCCAGAAATAAACATCTGAACCTTGACAGCAAGACCCTTCAGTCTGTGGGAGCAGATGGATGTGGAGATTCTTTCAGCACAATTGCACAAacacagatgaagctgaaatataGAGACGATGACTGCCTACAGGGATGATGATGTGTATTCTCTTTGGTTTAGTTTGACTGCAAAGTTCTTTTATCTGAAAAAAGTATAACTttaaactgtttatgtttttaaagacatatgttTAAAAGACAGAGGCTGTCCTGTGTTTTGAaagtattgttttacatgcaaGATGGCATTGCCTACAAATAGTTATGTTTTACTGAAAGTATATGTCATACTGAATGCAGACGGGTGATGTCTGTGATTTAACTTCATGCATAATATGCTTAGTGTCAAATAAACAGAAGAATTCAACTAAA
>TCONS_00035671
GACTGGTCCAATACTAGTCGGTGAGTAGAGGAAAACCATTGTTTCTAAACGCTAAATAGTTTTCTGACACCAGTCACTGCAACAAAAGCTTTTACTGTACCTTTACTGAAGCAGCAGTAAGTTACGTTAGTGTTAACACACCCCGTCCAAAATGGTCAACGTGTTGAAAGGAGTTCTCGTTGAATGTGATCCAGCTATGAAGCAGTTTCTACTATATCTGGATGAGACGTCAGCTTTGGGGAAGAAATTCATCATCCAGGATTTGGACGACACGCATGTTTTCATCTTAGCTGAAGTTGTGCAGATTCTCCAGGAGCGAGTAGGAGAACTGATGGACCAGAATTCATTTCCCATCACCCAGAAATAAACATCTGAACCTTGACAGCAAGACCCTTCAGTCTGTGGGAGCAGATGGATGTGGAGATTCTTTCAGCACAATTGCACAAacacagatgaagctgaaatataGAGACGATGACTGCCTACAGGGATGATGATGTGTATTCTCTTTGGTTTAGTTTGACTGCAAAGTTCTTTTATCTGAAAAAAGTATAACTttaaactgtttatgtttttaaagacatatgttTAAAAGACAGAGGCTGTCCTGTGTTTTGAaagtattgttttacatgcaaGATGGCATTGCCTACAAATAGTTATGTTTTACTGAAAGTATATGTCATACTGAATGCAGACGGGTGATGTCTGTGATTTAACTTCATGCATAATATGCTTAGTGTCAAATAAACAGAAGAATTCAA

Function

symbol description
gtf2h5 Predicted to be involved in nucleotide-excision repair, preincision complex assembly; phosphorylation of RNA polymerase II C-terminal domain; and transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair and transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex; transcription factor TFIIH core complex; and transcription factor TFIIH holo complex. Human ortholog(s) of this gene implicated in photosensitive trichothiodystrophy 3. Orthologous to human GTF2H5 (general transcription factor IIH subunit 5).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0070816 phosphorylation of RNA polymerase II C-terminal domain biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0006294 nucleotide-excision repair, preincision complex assembly biological_process
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0005669 transcription factor TFIID complex cellular_component
GO:0005675 transcription factor TFIIH holo complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair
ko03021 Transcription machinery
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-041001-144 Predicted to be involved in nucleotide-excision repair, preincision complex assembly; phosphorylation of RNA polymerase II C-terminal domain; and transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair and transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex; transcription factor TFIIH core complex; and transcription factor TFIIH holo complex. Human ortholog(s) of this gene implicated in photosensitive trichothiodystrophy 3. Orthologous to human GTF2H5 (general transcription factor IIH subunit 5).

Ensembl:

ensembl_id ENSDARG00000056099

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035667 False 911 mRNA 0.38 2 26045253 26047741
TCONS_00035668 False 714 mRNA 0.39 3 26045253 26047768
TCONS_00035669 False 686 mRNA 0.38 2 26045256 26047751
TCONS_00035670 False 822 mRNA 0.39 3 26045256 26047787
TCONS_00035671 True 764 mRNA 0.39 3 26045261 26047760

Neighbor

gene id symbol gene type direction distance location
XLOC_018098 si:dkey-12h9.6 coding downstream 3183 26026518 ~ 26042070 (-)
XLOC_018097 capn3b coding downstream 43963 25955118 ~ 26001290 (-)
XLOC_018096 churc1 coding downstream 110814 25929440 ~ 25934439 (-)
XLOC_018095 elmsan1a coding downstream 143112 25886491 ~ 25902141 (-)
XLOC_018094 exoc1 coding downstream 166646 25853012 ~ 25878607 (-)
XLOC_018100 serac1 coding upstream 517 26048304 ~ 26060154 (-)
XLOC_018101 myct1a coding upstream 14732 26062519 ~ 26070949 (-)
XLOC_018102 BX470119.1 coding upstream 71552 26119339 ~ 26119459 (-)
XLOC_018103 BX470119.2 coding upstream 146939 26194726 ~ 26194841 (-)
XLOC_018104 esr1 coding upstream 311969 26359756 ~ 26383375 (-)
XLOC_017928 CU539064.1 misc downstream 15991552 10053405 ~ 10053701 (-)
XLOC_018092 CR352243.2 non-coding downstream 332838 25710791 ~ 25712415 (-)
XLOC_018088 BX322665.2 non-coding downstream 439968 25600105 ~ 25605285 (-)
XLOC_018080 NA non-coding downstream 733799 25307795 ~ 25311454 (-)
XLOC_018078 NA non-coding downstream 1312944 24729131 ~ 24732309 (-)
XLOC_018077 NA non-coding downstream 1590324 24448007 ~ 24454929 (-)
XLOC_018107 NA non-coding upstream 398116 26445903 ~ 26458381 (-)
XLOC_018112 NA non-coding upstream 583283 26631070 ~ 26708526 (-)
XLOC_018116 BX248515.2 non-coding upstream 911746 26959533 ~ 26962756 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location