XLOC_018101 (myct1a)


Basic Information

Item Value
gene id XLOC_018101
gene name myct1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26062519 ~ 26070949 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035673
AAGACTTTGCTTTTCCACAAACAACAGAGTAGCGACCCTGGCCTTGGAGAGGATCCTGTGAGCCGGAGCTGAACAGTCTGGGGCTGAAAGAGagcaacacacacagacagacagaaagaaagagaaagaggaggGTCTCTAGAAGAGGAGAGCTGGACACACACTGGCAGAAACACTAGAAAAAGTTGGAAGCGGGAGTGAGAGGACGAAAGAGTTGGAGGAGAGAGACTGTGTCCTCTCTGGTCTCCCCCGTTTCTCTGGAGGGAGTGATGGCGGATAACAGCACTCATCCTATTATGAAGATCCTGGAGTCTTTCGGATTAACGGATGTGATTCTGGCCTTCTTTCTTTCTATGGTTGTTGGTCTTCTGCTTGGAGCTCTGGTCTATATGATATTGACCTGGATGTCCCGTCGACGGGCCTCGGCCACCATCACCCGCATACCTGTCCACCAGTCCCGTTCCACCACCCGTTCATCCTCACCTCGATCTCGGCTGGGTTACAGTCGGCACAGCAGTGGCTACGATCGGCGCAGTAATAATAGTCTGGCCAGCGCCGCCTTTTCATTCCACCGGCAGACCTCATCCTCGCCAATAGACTATGGAGACTCAACAGGTCGCAAATCAAGCTTCCGGGCCTCAACATTTCATCCTCTTCTCCAGTGTAGCCAGATTGCTCGCGAGGCAGAGGAAGGTGCCCAGGGCAGCCTGCCAAGGACCCCCACTCTCACTACCAGCCCTGGGGCAGCTGGATCCACCAGCACCGTCAGTTCTATGATCACTCCACCCAGGGCCAGAAACAGACCAGATTCCTTCTGGGGCAACAGCAATCTAAGAGGTTTCCATGCTGGCCAGACTCCACCGCCTGCCTATGACAGCATCATACGAGCCTATCAGGAGACAACCACGTAAATTAAAATAGGGGAGATTCTGCAGTTTTGGGGCAAGATTCATGTATAGACTTGAAAACTGGACATCTAATGTATGCCTTTAATTGACATGGCCAGTTTTTCAAacttgtatgtgtgtatatttctGTGTGTGTACAAAGTCAGTGTGAAATACTTGTATCAGAATGTTTGAAAAAGACAGTAAGAATTCTACTGCTCTGACTATATAAGACTATCAAGCCAATCTGCTTTTGATAGATGAGAATGTTGATGCAGAGAAACAGGGAAAGGATAAATAAAGCAAGAGATAAGGAAGGTTGAGGTAAGCAAGAGGATAAAGCAGTTATTGCAATTCCTAGACCAAGCAGTTGTTATAACTCTGTTTTGCACCAGACTCATTAGATTTTgtatttattggtttgttttctGGGAACTCTAGTCTTTTGAAATGGTTGTAAGTATTTCTCAATGCAGCTGTAATCATAAAAATATTCTGACACA
>TCONS_00036842
CAGCTCAGATTCCTTCTGGGGCAACAGCAATCTAAGAGGTTTCCATGCTGGCCAGACTCCACCGCCTGCCTATGACAGCATCATACGAGCCTATCAGGAGACAACCACGTAAATTAAAATAGGGGAGATTCTGCAGTTTTGGGGCAAGATTCATGTATAGACTTGAAAACTGGACATCTAATGTATGCCTTTAATTGACATGGCCAGTTTTTCAAacttgtatgtgtgtatatttctGTGTGTGTACAAAGTCAGTGTGAAATACTTGTATCAGAATGTTTGAAAAAGACAGTAAGAATTCTACTGCTCTGACTATATAAGACTATCAAGCCAATCTGCTTTTGATAGATGAGAATGTTGATGCAGAGAAACAGGGAAAGGATAAATAAAGCAAGAGATAAGGAAGGTTGAGGTAAGCAAGAGGATAAAGCAGTTATTGCAATTCCTAGACCAAGCAGTTGTTATAACTCTGTTTTGCACCAGACTCATTAGATTTTgtatttattggtttgttttctGGGAACTCTAGTCTTTTGAAATGGTTGTAAGTATTTCTCAATGCAGC

Function

symbol description
myct1a Acts upstream of or within embryonic hemopoiesis. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleoplasm. Is expressed in axial vasculature; ventral mesenchyme; and ventral mesoderm. Orthologous to human MYCT1 (MYC target 1).

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-143 Acts upstream of or within embryonic hemopoiesis. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleoplasm. Is expressed in axial vasculature; ventral mesenchyme; and ventral mesoderm. Orthologous to human MYCT1 (MYC target 1).

Ensembl:

ensembl_id ENSDARG00000056125

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035673 False 1390 mRNA 0.47 2 26062519 26066020
TCONS_00036842 True 565 lncRNA 0.39 2 26062545 26070949

Neighbor

gene id symbol gene type direction distance location
XLOC_018100 serac1 coding downstream 2365 26048304 ~ 26060154 (-)
XLOC_018099 gtf2h5 coding downstream 14732 26045253 ~ 26047787 (-)
XLOC_018098 si:dkey-12h9.6 coding downstream 20449 26026518 ~ 26042070 (-)
XLOC_018097 capn3b coding downstream 61229 25955118 ~ 26001290 (-)
XLOC_018096 churc1 coding downstream 128080 25929440 ~ 25934439 (-)
XLOC_018102 BX470119.1 coding upstream 48390 26119339 ~ 26119459 (-)
XLOC_018103 BX470119.2 coding upstream 123777 26194726 ~ 26194841 (-)
XLOC_018104 esr1 coding upstream 288807 26359756 ~ 26383375 (-)
XLOC_018105 armt1 coding upstream 316230 26387179 ~ 26391958 (-)
XLOC_018106 akap12b coding upstream 336809 26407758 ~ 26467454 (-)
XLOC_017928 CU539064.1 misc downstream 16008818 10053405 ~ 10053701 (-)
XLOC_018092 CR352243.2 non-coding downstream 350104 25710791 ~ 25712415 (-)
XLOC_018088 BX322665.2 non-coding downstream 457234 25600105 ~ 25605285 (-)
XLOC_018080 NA non-coding downstream 751065 25307795 ~ 25311454 (-)
XLOC_018078 NA non-coding downstream 1330210 24729131 ~ 24732309 (-)
XLOC_018077 NA non-coding downstream 1607590 24448007 ~ 24454929 (-)
XLOC_018107 NA non-coding upstream 374954 26445903 ~ 26458381 (-)
XLOC_018112 NA non-coding upstream 560121 26631070 ~ 26708526 (-)
XLOC_018116 BX248515.2 non-coding upstream 888584 26959533 ~ 26962756 (-)

Expression


Co-expression Network