XLOC_018105 (armt1)


Basic Information

Item Value
gene id XLOC_018105
gene name armt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26387179 ~ 26391958 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035680
ACGAGTTCTTCCTGTTTGCAAAGATGGAGGCAGAGGGAATGTTGCCCCCGCAGTCGCTCTCTGCTAAGTTTGAGGGGTCCTTTGCCTATCTGACTGTGAGAGACAGACTGCCAACTATACTCACAAAAGTGGTGGACACATTACACCGCAATAAGGACAACTTCTATAAAGAATATGgcgagGAAGGGACGGAGGCAGAGAAGAGGGCCATCTCCTTCCTGTCTAGGCTGAGGAATGAACTGCAGACAGACAAACCTGTGCTGGCTCTCACTGATAATGCTGAAGACACACAGGCCTGGAATGAATACATGGAAAGACAGCAGGACCTGATGGAGAATGGGCAGCTGGTCAGCTGGTTCAAGTCGCCGTGGCTCTATGTGGAGTGTTACATGTACCGAAGGATCCAAGAGGCTCTGTATATGAATCCACCGATGCATAACTTTGACCCGTTTAAGGAGGGAAAAACGCAAAGCTACTTTGAATCTCAGCAAGCGATTAAGTACCTCTGCACGTACCTTCAGGAGCTCATCACCAACATGGAGAACATGACAGAGATACAGCTGCGAGAGAACTTCCTCAAGCTGATCCAGGTCTCTCTGTGGGGAAACAAGTGTGATCTGTCCATCTCTGCGGGTCAAGACAACTCTCAAAAGTTAAGTCCCATTGATTCTCTGCCTGATCTCCAGCGCTTCATCCTAGTGGATGACTCCAGCATGGTTTGGTCAACACTAGTTGCTTCTCAAGGGTCCAGATCCTCAGGGATGAAACATGCAAGAGTGGATATTATTTTAGACAACGCTGGTTTTGAACTCGTTACTGATCTAGTTCTTGCAGACTTCCTTATTTCATCCGGACTGGCCAAGCAAATCAGATTTCATGGCAAGTCCATCCCATGGTTTGTTTCAGACGTCACTAAACAAGACTTTGAGTGGACCATCAAGCAGACCATGGCAGCCAATCACAAGTGGATGTCAGCCAGCGGTGTCCAATGGAAGCATTTCATGAAGGAGGGTACCTGGTCCTACCACGACCATCCATTTTGGACTCTGCCCCATGAGTTCTGCGACATGACGGTGGATGCAGCTAATCTCTACAGCACACTGCAGACCTCAGACCTGATTCTCTTCAAAGGAGATCTGAACTACAGGAAGCTGACTGGAGATAGGAAATGGGAGCACACGGTTCGGTTTGATCAAGCACTTAGGGGGTTCCAGCCAGCCCCTCTCTGCAGTCTCAGGACACTAAAAGCTGATGTTCAGGTGGGCTTACAGGCGGGTCACGCAGAGAAGCTCAGCACTCAGGATCCAGACTGGATGACCAATGGAAAATACGCCGTGGTGCAGTTTTCCAGTCCACACAGAGAACAGTAGAGGCTGATAAGGGTGATAACCAgaagcaaaatattaaaaaaatgcaccCTTCGGTTACCAACATGCCAAACAAATGTCTGCTAATCTCTGCTTGTGTTTATTATTCAACAGTTTTAGAGCAAGTCATGTAACGACTCTTTCTGCACATCGAATGTTTTCATTGTTAATTGATAAGTGAAGGTTTGAAGAGACGCCTGGCAGAGCTCGAGCCTAGTTTACAGAGTAATAGATTGTCTGTTTGCACTGCTGGTTTGTATTCAGTCCAAGAATATTTGCCACAAAAATACAGATGTACAAACATTAAGATGTGGCACGCGCTGTACATTTGATAAAAgtctacaaaaaaaatgtttttatcacggtaaagggattgttcacccaaaaaattaaaacTCACTCACTA
>TCONS_00035681
CGAGTTCTTCCTGTTTGCAAAGATGGAGGCAGAGGGAATGTTGCCCCCGCAGTCGCTCTCTGCTAAGTTTGAGGGGTCCTTTGCCTATCTGACTGTGAGAGACAGACTGCCAACTATACTCACAAAAGTGGTGGACACATTACACCGCAATAAGGACAACTTCTATAAAGAATATGgcgagGAAGGGACGGAGGCAGAGAAGAGGGCCATCTCCTTCCTGTCTAGGCTGAGGAATGAACTGCAGACAGACAAACCTGTGCTGGCTCTCACTGATAATGCTGAAGACACACAGGCCTGGAATGAATACATGGAAAGACAGCAGGACCTGATGGAGAATGGGCAGCTGGTCAGCTGGTTCAAGTCGCCGTGGCTCTATGTGGAGTGTTACATGTACCGAAGGATCCAAGAGGCTCTGTATATGAAGTAACGCAAATCTGCTAAATCAGTACATTATGAGGCCAAATTAAGAAATCCACAGAGAATTTATGTTACATTAAAATCATTACTTTGG

Function

symbol description
armt1 Predicted to enable S-adenosylmethionine-dependent methyltransferase activity; phosphatase activity; and protein carboxyl O-methyltransferase activity. Predicted to be involved in methylation and regulation of response to DNA damage stimulus. Orthologous to human ARMT1 (acidic residue methyltransferase 1).

GO:

id name namespace
GO:2001020 regulation of response to DNA damage stimulus biological_process
GO:0032259 methylation biological_process
GO:0005575 cellular_component cellular_component
GO:0051998 protein carboxyl O-methyltransferase activity molecular_function
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-51 Predicted to enable S-adenosylmethionine-dependent methyltransferase activity; phosphatase activity; and protein carboxyl O-methyltransferase activity. Predicted to be involved in methylation and regulation of response to DNA damage stimulus. Orthologous to human ARMT1 (acidic residue methyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000055676

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035680 False 1773 mRNA 0.46 5 26387179 26391958
TCONS_00035681 True 511 processed_transcript 0.47 3 26390795 26391957

Neighbor

gene id symbol gene type direction distance location
XLOC_018104 esr1 coding downstream 3804 26359756 ~ 26383375 (-)
XLOC_018103 BX470119.2 coding downstream 192338 26194726 ~ 26194841 (-)
XLOC_018102 BX470119.1 coding downstream 267720 26119339 ~ 26119459 (-)
XLOC_018101 myct1a coding downstream 316230 26062519 ~ 26070949 (-)
XLOC_018100 serac1 coding downstream 327025 26048304 ~ 26060154 (-)
XLOC_018106 akap12b coding upstream 15800 26407758 ~ 26467454 (-)
XLOC_018107 NA coding upstream 53945 26445903 ~ 26458381 (-)
XLOC_018108 mthfd1l coding upstream 86239 26478197 ~ 26532167 (-)
XLOC_018109 stx11b.2 coding upstream 143384 26535342 ~ 26537171 (-)
XLOC_018110 si:dkey-25e12.3 coding upstream 151725 26543683 ~ 26551233 (-)
XLOC_017928 CU539064.1 misc downstream 16333478 10053405 ~ 10053701 (-)
XLOC_018092 CR352243.2 non-coding downstream 674764 25710791 ~ 25712415 (-)
XLOC_018088 BX322665.2 non-coding downstream 781894 25600105 ~ 25605285 (-)
XLOC_018080 NA non-coding downstream 1075725 25307795 ~ 25311454 (-)
XLOC_018112 NA non-coding upstream 239112 26631070 ~ 26708526 (-)
XLOC_018116 BX248515.2 non-coding upstream 567575 26959533 ~ 26962756 (-)
XLOC_018118 BX248515.3 non-coding upstream 662137 27054095 ~ 27054220 (-)
XLOC_018129 NA non-coding upstream 1722806 28114764 ~ 28164152 (-)

Expression


Co-expression Network