XLOC_018107


Basic Information

Item Value
gene id XLOC_018107
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26445903 ~ 26458381 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036843
AGTGCTTTCATCAGGAGCAAGCATCAATAACGTTTCATTACAGCCCTGCCAGAAAAAGACAATCACCTTCCACCGTTTACTTTTGTCTGCACTTCACAGCTCAAGAAAGCCATTGTGCTACTGAACTAACGGCTAAAGGTTCCTAGATGTGTAGCTTATCACAAATATAGTGGAGGGTGTTGGCTCATATATAGTACATTTGAAGAATAACATTGTCAAGGTTTGTGAGCATGGATTACGGATTTCCGAGTTTGGATCCTCAACCTCAGaaaaactaaatagaaGAAAACAATGGGAGGAGCTGAGGACTTCCTGTATCGGGCACATGCGCAGTTTCCTCTTTACTGCAGTGCAGCCTCCTCAGCTCAGTGCTGTACCAAAAATAACCAGATGCTGCTCTGTCCTGTCTTTCTCTCTCACGCTCTCCCTCTTTCTTTCCCTCAGAGGACAGAATAACCCTTCTTCATCCTTGAATGTCAAAGCATGACTCATGCCTCTTGACAAACTGATGTGTTCCCTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036843 True 520 lncRNA 0.44 2 26445903 26458381

Neighbor

gene id symbol gene type direction distance location
XLOC_018105 armt1 coding downstream 53945 26387179 ~ 26391958 (-)
XLOC_018104 esr1 coding downstream 62528 26359756 ~ 26383375 (-)
XLOC_018103 BX470119.2 coding downstream 251062 26194726 ~ 26194841 (-)
XLOC_018102 BX470119.1 coding downstream 326444 26119339 ~ 26119459 (-)
XLOC_018101 myct1a coding downstream 374954 26062519 ~ 26070949 (-)
XLOC_018108 mthfd1l coding upstream 19816 26478197 ~ 26532167 (-)
XLOC_018109 stx11b.2 coding upstream 76961 26535342 ~ 26537171 (-)
XLOC_018110 si:dkey-25e12.3 coding upstream 85302 26543683 ~ 26551233 (-)
XLOC_018111 exoc2 coding upstream 114075 26572456 ~ 26624042 (-)
XLOC_018112 NA coding upstream 172689 26631070 ~ 26708526 (-)
XLOC_017928 CU539064.1 misc downstream 16392202 10053405 ~ 10053701 (-)
XLOC_018092 CR352243.2 non-coding downstream 733488 25710791 ~ 25712415 (-)
XLOC_018088 BX322665.2 non-coding downstream 840618 25600105 ~ 25605285 (-)
XLOC_018080 NA non-coding downstream 1134449 25307795 ~ 25311454 (-)
XLOC_018116 BX248515.2 non-coding upstream 501152 26959533 ~ 26962756 (-)
XLOC_018118 BX248515.3 non-coding upstream 595714 27054095 ~ 27054220 (-)
XLOC_018129 NA non-coding upstream 1656383 28114764 ~ 28164152 (-)
XLOC_018130 NA non-coding upstream 1774896 28233277 ~ 28233592 (-)

Expression


Co-expression Network