XLOC_018109 (stx11b.2)


Basic Information

Item Value
gene id XLOC_018109
gene name stx11b.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26535342 ~ 26537171 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035693
ACTCGTGCATCGCTGGCTGCAGAGGTGAAGTCCTGTTACgttaaatgcatttgttattttcaCGGACGGATTGGCTTTTGTATTAAGCTGATTTTAGGAGGAAGGGACAGAGAAGGATATAATTTGAGTCAACTACTTCAGCTATGAGGGACAGACTTGGCCACCTCCAGGAAGTTTCAATGTCTAATGGGACAGTTGCAGAGCATGAAACTGCCCATTCACTCCCTGCTTCAGAAAACACAGACCTCTATGACCTTCCTCAGGACTCCAGCACCAACCCTGACATGGAAGCTGTGTTTGATGAAGCACAGGAGGCTCGCCGTCAAATTCACTATATTCGTCTGGAAGTAAAGCGTCTCAGGGAGCAAAACTCACACTTTTTTGGCTCTAGTGCGTCTAATACCACCAGTGACCGCAATGCAATTGCAGCTGACATCAAAACTCGTGGTCAGGAGATGCTTACACACCTTCGCAACATGGACTCCCATGGAAAGGAGCTAGAGTCAAAATATGGTGTCAATTCACCAGTGGCAAGAATAGCCCGAACACAGTATTCCAGCATAAGCAACAGTTTTCGTGATGCCATGGTGGAGTACAATGATGCTGAGATGAGCCACAAAGAGTCCTGCAAGGCTTATATTCAGCGGCAGATGGAGATTGTGGGGAGAGATGTTACTGGAGATCAGATCGAGGAGATGCTGGAGAGCGGTCAGTGGAACGTCTTCAGTGAGAACATGGTTTCTGAGGGTAAAACCGCACGGTCTGCCCTCATCCAAATCGAGAGCCGGCATACAGAAATGGTACAGCTGGAGAGACGCATTAAGAGCCTTCATGAGGTTTTTCTGGATGTGGCCATGCTTGTAGAGGAGCAGAGCTCAATGACAGACTACATTCAAACCAATGTTCAGTCGACTGAAGCAGAGGTCAGGCAGGTCCTTGTGAAGCTGGAGAGAGCCAAGAGACATGATAGGAACAACCCATTTAAGAAAATGTTCTTCTGGAAACGGTGAAATGGCCACACAGTGTATAGTGGTGTTCAAAAGAAACAATTGTCCAAGTATTACAGATTTTATTAcagttctaatttctaatttatttctcCAAGCAGATTGCAcacatcattacaataaaatcatTACAAACTtcataacatatttaaatatattcatcaTAATGTTTATATTGAGCTACTGCCATTTTCTACAGATAAGTGCTGAAAATCTTAATATTCACATTTGAAGTGTTGAAGATATTTTATcagtagtttataaaataaaagatgTTTTACTCAAACATGTCTATAGCATATGCAGAGAATCATTATAACTTTGAATGCTTTTGCTATGGAGaatttgaaataaaaagtaa
>TCONS_00035694
TCAACTACTTCAGCTATGAGGGACAGACTTGGCCACCTCCAGGAAGTTTCAATGTCTAATGGGACAGTTGCAGAGCATGAAACTGCCCATTCACTCCCTGCTTCAGAAAACACAGACCTCTATGACCTTCCTCAGGACTCCAGCACCAACCCTGACATGGAAGCTGTGTTTGATGAAGCACAGGAGGCTCGCCGTCAAATTCACTATATTCGTCTGGAAGTAAAGCGTCTCAGGGAGCAAAACTCACACTTTTTTGGCTCTAGTGCGTCTAATACCACCAGTGACCGCAATGCAATTGCAGCTGACATCAAAACTCGTGGTCAGGAGATGCTTACACACCTTCGCAACATGGACTCCCATGGAAAGGAGCTAGAGTCAAAATATGGTGTCAATTCACCAGTGGCAAGAATAGCCCGAACACAGTATTCCAGCATAAGCAACAGTTTTCGTGATGCCATGGTGGAGTACAATGATGCTGAGATGAGCCACAAAGAGTCCTGCAAGGCTTATATTCAGCGGCAGATGGAGATTGTGGGGAGAGATGTTACTGGAGATCAGATCGAGGAGATGCTGGAGAGCGGTCAGTGGAACGTCTTCAGTGAGAACATGGTTTCTGAGGGTAAAACCGCACGGTCTGCCCTCATCCAAATCGAGAGCCGGCATACAGAAATGGTACAGCTGGAGAGACGCATTAAGAGCCTTCATGAGGTTTTTCTGGATGTGGCCATGCTTGTAGAGGAGCAGAGCTCAATGACAGACTACATTCAAACCAATGTTCAGTCGACTGAAGCAGAGGTCAGGCAGGTCCTTGTGAAGCTGGAGAGAGCCAAGAGACATGATAGGAACAACCCATTTAAGAAAATGTTCTTCTGGAAACGGTGA

Function

symbol description
stx11b.2 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; synaptic vesicle fusion to presynaptic active zone membrane; and vesicle docking. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 4. Orthologous to human STX11 (syntaxin 11).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0048278 vesicle docking biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0048787 presynaptic active zone membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-148 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; synaptic vesicle fusion to presynaptic active zone membrane; and vesicle docking. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 4. Orthologous to human STX11 (syntaxin 11).

Ensembl:

ensembl_id ENSDARG00000042231

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035693 False 1368 mRNA 0.42 2 26535342 26537171
TCONS_00035694 True 882 mRNA 0.48 1 26535700 26536581

Neighbor

gene id symbol gene type direction distance location
XLOC_018108 mthfd1l coding downstream 3175 26478197 ~ 26532167 (-)
XLOC_018106 akap12b coding downstream 67888 26407758 ~ 26467454 (-)
XLOC_018107 NA coding downstream 76961 26445903 ~ 26458381 (-)
XLOC_018105 armt1 coding downstream 143384 26387179 ~ 26391958 (-)
XLOC_018104 esr1 coding downstream 151967 26359756 ~ 26383375 (-)
XLOC_018110 si:dkey-25e12.3 coding upstream 6512 26543683 ~ 26551233 (-)
XLOC_018111 exoc2 coding upstream 35285 26572456 ~ 26624042 (-)
XLOC_018112 NA coding upstream 93899 26631070 ~ 26708526 (-)
XLOC_018113 gmds coding upstream 171838 26709009 ~ 26822550 (-)
XLOC_018114 mylk4b coding upstream 290094 26827265 ~ 26866111 (-)
XLOC_017928 CU539064.1 misc downstream 16481641 10053405 ~ 10053701 (-)
XLOC_018103 BX470119.2 non-coding downstream 340501 26194726 ~ 26194841 (-)
XLOC_018102 BX470119.1 non-coding downstream 415883 26119339 ~ 26119459 (-)
XLOC_018092 CR352243.2 non-coding downstream 822927 25710791 ~ 25712415 (-)
XLOC_018088 BX322665.2 non-coding downstream 930057 25600105 ~ 25605285 (-)
XLOC_018116 BX248515.2 non-coding upstream 422362 26959533 ~ 26962756 (-)
XLOC_018118 BX248515.3 non-coding upstream 516924 27054095 ~ 27054220 (-)
XLOC_018129 NA non-coding upstream 1577593 28114764 ~ 28164152 (-)
XLOC_018130 NA non-coding upstream 1696106 28233277 ~ 28233592 (-)

Expression


Co-expression Network