XLOC_018110 (si:dkey-25e12.3)


Basic Information

Item Value
gene id XLOC_018110
gene name si:dkey-25e12.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26543683 ~ 26551233 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035695
ATTTCAAAAGAAATACAAAGTAGGCTGCAATATTCGCACAATGTAACTATTTTAGTGTCCGCTAATAACGCCTGCTCCTGTGAGTTCAAATGAATACTGCAATGTGAGTAAGTGTGTGACGGTTTTAGTGAGAAAGACTATTAAGCCTTGTCTCGCCTTGTCACTCCGTTAATTCTCACCTATTACATTGTATTTTCATGTTAGACGCCTTTTTTCGTGTCAAGCTTTTTTACGACAGTCTCTGGATTTGCTCAAACCGAAAGTGTCAGGACGCACAGTGCTAAAACCGTAAGCAAAATTTATGAAGTTTTATACACGCGGCTAACGTAATACTGTAACGTACTGTATCACCGAGACTCTGTCATAAAACTGATGAGCTCATAGGATTTAAATGGAGGAACACGGAAGAGCGGTTGACACAATTTACTGGAAACTTAAGAGGCGGTTTCGGTTTGCCGGACATTGAGCCAGAATGTGTGATAACAGCTGTTTCTGTGAAAACAAGCAGGATACCATAGACGAAAGCCTGGACAAAACGTGTATCTTCTGTACCATCGCGAAGGGCGATGATCGATACACTGAGATACTCGCAGAGGATGAGGACTTTGTTTGCTTCAGGGACATCAATCCAGGTGCACCTCATCACTACTTGGTTATACCAAAGAAACACATCTATAGCTGTTTGTCGCTCTATGCAGATGACATAAGTCTTGTTAGGGGGATGGCAGAGATGGGAAGAAATGTACTGAAAGCCAACAATGTGACAGATTTGAAAGACATCAGTCTAGGTTTCCACGTGCCTCCGTATATCACCGTCCCACATCTGCATCTACATGTTCTTGCACCTTACAGCCAGCTGTATAAATGGgcaataaataaatttagaacCAATTGGTACATAAACGAGGAGAAGACTGTTGAGATTCTGATGAAGGGAAAAACTCAGATGGTCTAAAAGGGATTTGTGCTAGATCTGAATCTTCATGAATCTTTGTCTGAGGAAACTTGAAATCACAAGCCACTTAATTGAAGATTAGGGTCACTgcaaatttcatatttttattttatttactactgaAGCCTTTTTTTTACTAGAATGGAAGATTTATATTACTGACAGTTACTAACAAAGTgtgatatttattgttattgcaTAGTCTGTTATTCACTTTATTCATTTTAGATCACAGTCCACATGCTTTATTGTCAGCAATGATCAAATaccatagtattattattaattattatataagaATCAGAGGTCATTAaagctcattcattcatcattcattttcttttcggcttagtccctttattaatctcgggttgccacaatggaataaacccctaacttatccagcatatgttttacacagtgtatgcccctccagctgcaacccatcactgggaaacactcatttacacacatacactaaggacaattttagcttacccaattcatctatagcatgtctttggatttgtgggggaaaccggagcactcggaggaaacccacgcgaacacgaggagaacatgcaaactctacacagaaatgcctcaataaagctCAGTATATACTTATTCATATATTGATGTACATGCATTCTAATTGATgatatataaatgataatttatctatatttatgtgttttgaataaaaccttttttttctgaaa
>TCONS_00035696
GTTTGCCGGACATTGAGCCAGAATGTGTGATAACAGCTGTTTCTGTGAAAACAAGCAGGATACCATAGACGAAAGCCTGGACAAAACGTGTATCTTCTGTACCATCGCGAAGGGCGATGATCGATACACTGAGATACTCGCAGAGGATGAGGACTTTGTTTGCTTCAGGGACATCAATCCAGGTGCACCTCATCACTACTTGGTTATACCAAAGAAACACATCTATAGCTGTTTGTCGCTCTATGCAGATGACATAAGTCTTGTTAGGGGGATGGCAGAGATGGGAAGAAATGTACTGAAAGCCAACAATGTGACAGATTTGAAAGACATCAGTCTAGGTTTCCACGTGCCTCCGTATATCACCGTCCCACATCTGCATCTACATGTTCTTGCACCTTACAGCCAGCTGTATAAATGGgcaataaataaatttagaacCAATTGGTACATAAACGTGAGTAAACTAAAGCTATTTCTTATGATCACACTTGGTTGTATATAAGTTCATAaagtttgacaattttttttagtgtttcagtttgttttttgtgCCTTATAGGAGGAGAAGACTGTTGAGATTCTGATGAAGGGAAAAACTCAGATGGTCTAAAAGGGATTTGTGCTAGATCTGAATCTTCATGAATCTTTGTCTGAGGAAACTTGAAATCACAAGCCACTTAATTGAAGATTAGGGTCACTgcaaatttcatatttttattttatttactactgaAGCCTTTTTTTTACTAGAATGGAAGATTTATA
>TCONS_00035697
GAGCGGTTGACACAATTTACTGGAAACTTAAGAGGCGGTTTCGGTTTGCCGGACATTGAGCCAGAATGTGTGATAACAGCTGTTTCTGTGAAAACAAGCAGGATACCATAGACGAAAGCCTGGACAAAACGTGTATCTTCTGTACCATCGCGAAGGGCGATGATCGATACACTGAGATACTCGCAGAGGATGAGGACTTTGTTTGCTTCAGGGACATCAATCCAGGTGCACCTCATCACTACTTGGTTATACCAAAGAAACACATCTATAGCTGTTTGTCGCTCTATGCAGATGACATAAGTCTTGGTAagattgtgtgttttttgtggaGTGGCATTTGATTATTTGTGACTAACCATGATTTAGGAATAGCTTTTATACTTGCAGCCAGCAGGGGACAGCAACAGACAGAGAAATTAAAAATGGGCTTTATGCACATCTTGTGTTATTCAGCCAATgatgcaggggcggactgggactaaaaatcagccctggcactgtaaccacaccagcccacattaccacaccgacacagccccatgtACGGACACGCATATTCACTACTCATATTattgtacagatggtgaaataatataagcagtaccatatgtgctacatatttaaacatttaatgcatgtgactggaacaaaaacaacctatttataacaaatttatctatgcaatcattttattcattcattatcttttcggcttagtccctttattaatcagggatcgccacagcgg
>TCONS_00036845
accatcaaaTGACAGTTGTGAATATTTCAAAAGAAATACAAAGTAGGCTGCAATATTCGCACAATGTAACTATTTTAGTGTCCGCTAATAACGCCTGCTCCTGTGAGTTCAAATGAATACTGCAATGTGAGTAAGTGTGTGACGGTTTTAGTGAGAAAGACTATTAAGCCTTGTCTCGCCTTGTCACTCCGTTAATTCTCACCTATTACATTGTATTTTCATGTTAGACGCCTTTTTTCGTGTCAAGCTTTTTTACGACAGTCTCTGGATTTGCTCAAACCGAAAGTGTCAGGACGCACAGTGCTAAAACCGATACCATAGACGAAAGCCTGGACAAAACGTGTATCTTCTGTACCATCGCGAAGGGCGATGATCGATACACTGAGATACTCGCAGAGGATGAGGACTTTGTTTGCTTCAGGGACATCAATCCAGGTGCACCTCATCACTACTTGGTTATACCAAAGAAACACATCTATAGCTGTTTGTCGCTCTATGCAGATGACATAAGTCTTGGTAagattgtgtgttttttgtggaGTGGCATTTGATTATTTGTGACTAACCATGATTTAGGAATAGCTTTTATACTTGCAGCCAGCAGGGGACAGCAACAGACAGAGAAATTAAAAATGGGCTTTATGCACATCTTGTGTTATTCAGCCAATgatgcaggggcggactgggactaaaaatcagccctggcactgtaaccacaccagcccacattaccacaccgacacagccccatgtACGGACACGCATATTCACTACTCATATTattgtacagatggtgaaataatataagcagtaccatatgtgctacatatttaaacatttaatgcatgtgactggaacaaaaacaacctatttataacaaatttatctatgcaatcattttattcattcattatcttttcggcttagtccctttattaatcagggatcgccacagcgg
>TCONS_00035698
accatcaaaTGACAGTTGTGAATATTTCAAAAGAAATACAAAGTAGGCTGCAATATTCGCACAATGTAACTATTTTAGTGTCCGCTAATAACGCCTGCTCCTGTGAGTTCAAATGAATACTGCAATGTGAGTAAGTGTGTGACGGTTTTAGTGAGAAAGACTATTAAGCCTTGTCTCGCCTTGTCACTCCGTTAATTCTCACCTATTACATTGTATTTTCATGTTAGACGCCTTTTTTCGTGTCAAGCTTTTTTACGACAGTCTCTGGATTTGCTCAAACCGAAAGTGTCAGGACGCACAGTGCTAAAACCGATACCATAGACGAAAGCCTGGACAAAACGTGTATCTTCTGT

Function

symbol description
si:dkey-25e12.3 Predicted to enable hydrolase activity and nucleotide binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human HINT3 (histidine triad nucleotide binding protein 3).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-132 Predicted to enable hydrolase activity and nucleotide binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human HINT3 (histidine triad nucleotide binding protein 3).

Ensembl:

ensembl_id ENSDARG00000055365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035695 False 1677 mRNA 0.38 5 26543683 26551210
TCONS_00035696 False 765 lncRNA 0.39 4 26544250 26550760
TCONS_00035697 False 748 lncRNA 0.42 2 26548237 26550803
TCONS_00036845 False 958 lncRNA 0.40 3 26548237 26551233
TCONS_00035698 True 353 processed_transcript 0.40 2 26550661 26551233

Neighbor

gene id symbol gene type direction distance location
XLOC_018109 stx11b.2 coding downstream 6512 26535342 ~ 26537171 (-)
XLOC_018108 mthfd1l coding downstream 11516 26478197 ~ 26532167 (-)
XLOC_018106 akap12b coding downstream 76229 26407758 ~ 26467454 (-)
XLOC_018107 NA coding downstream 85302 26445903 ~ 26458381 (-)
XLOC_018105 armt1 coding downstream 151725 26387179 ~ 26391958 (-)
XLOC_018111 exoc2 coding upstream 21223 26572456 ~ 26624042 (-)
XLOC_018112 NA coding upstream 79837 26631070 ~ 26708526 (-)
XLOC_018113 gmds coding upstream 157776 26709009 ~ 26822550 (-)
XLOC_018114 mylk4b coding upstream 276032 26827265 ~ 26866111 (-)
XLOC_018115 ftr79 coding upstream 369448 26920681 ~ 26937453 (-)
XLOC_017928 CU539064.1 misc downstream 16489982 10053405 ~ 10053701 (-)
XLOC_018103 BX470119.2 non-coding downstream 348842 26194726 ~ 26194841 (-)
XLOC_018102 BX470119.1 non-coding downstream 424224 26119339 ~ 26119459 (-)
XLOC_018092 CR352243.2 non-coding downstream 831268 25710791 ~ 25712415 (-)
XLOC_018088 BX322665.2 non-coding downstream 938398 25600105 ~ 25605285 (-)
XLOC_018116 BX248515.2 non-coding upstream 408300 26959533 ~ 26962756 (-)
XLOC_018118 BX248515.3 non-coding upstream 502862 27054095 ~ 27054220 (-)
XLOC_018129 NA non-coding upstream 1563531 28114764 ~ 28164152 (-)
XLOC_018130 NA non-coding upstream 1682044 28233277 ~ 28233592 (-)

Expression


Co-expression Network