XLOC_018111 (exoc2)


Basic Information

Item Value
gene id XLOC_018111
gene name exoc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26572456 ~ 26624042 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035699
GATTGGTCGTGTGGGCGGTGCCGCTGCACCCAAACCGGAACTATTTTTCAGAGAAAAGAAGCGGTGCATTTACTTTTCATTGctttaagtaaaGTGTGTGAAGGATGTCTCGGGCCCGCCAGCCTCCCTTGGTGACAGGCATCTCACCTAATGAGGGTGCGCCTTGGACCAAAGTTACCATTCGAGGGGAGAACCTGGGCACCGGACCCAATGATCTGATTGGTCTGTCCATCTGTGGTCATAACTGTTTGCTGACAGCAGAATGGATGTCTGCAAGTAAGATAGTGTGTCGAGTGGGTCCTGCTAAAGATGACAAAGGCGAGATCATCGTCACCACCAAAAGCGGAGGCAGAGGGACGTCCACCGTATCCTTCAAACTGCTCAAACCAGAGAGAATCGGCATTCTGGATCAGTCTGCGGTCTGGGTTGATGAGTTGAATTACTATGACATGAGGACCGATCGGAACAAAGGAATCTCTCCTCTCTCTTTGAGGCCGGCAAACCCTTTGGGCATTGACATAGACAGAGGGAAGGTTCCTTTGAAGGATCTGGAGAACATGTTTCCTGGAATGAGCGGCGATTTCACCAGTGAGAATTTCTCTGCCACCTGGTACCTGATCGAGAACCATTCATCAACCAGTTTCGAGCATCTACGTGCGGGAGTGGGGAACCTGAAGAAACAGGCCAGTAAGAAGAACGAGGGCAGTCTGGCGTATGTGAAAGGAGGTCTCAGCACTTTCTTTGAGGCTCAGGATGCTCTTGCAGCCATCCATCAGAAGCTGGAATCGGACGGCACAGAGAAGGTGGAGGGCTCTATGACCCAGCGACTGGAGACCATCCTGAACAGAGCAAGTGAAACTGCTGACACTCTGTTTCAAGAAGTGCTGGGCAGAAAGGACAAGGCCGACTCCACACGCAACGCTCTCAACGTTCTCCAGAGATTCAAGTTTCTCTTTAACCTGCCGCTCAACATTGAACGCAATATACAGAAGGGCGATTATGATGTGGTCATCAATGATTATGAGAAAGCCAAGTCTCTGTTCGGCAACACAGAGGTCCCAGTCTTTAAGAAAGTGTATTCCGAAGTGGAGACTCGCATTGAAGCCCTGAGGAAACTGCTTTTGGACAAACTTCTGGAAACGCCGTCTACTCTGCATGATCAAAAACGCTACATCAGATATCTGTCAGACCTGCATGCTCCAGGTGACCCGGCATGGCAGTGTATCATCGCCCAGCACAAGTGGATTCTCCAGCTGATGCAAAACTGTAAAGAAGATTTCATCAAAGAGCagaaagTGGGTGGTGTCGGGTTGGATCTGGATCGTTCTTCAGTTCTGAACAGGATCAGTCTCTCGGCTCCAGTGAAGAGAGGAGGCAGTTTCCAGACGCCTAAAGATGACTCTTGGCACTATAAAAGCCCTCAGCAGGTGAGGTTTGTGGAGAAGCTCTCAGATGTAGTCATCAGTCAGCTGCCCAACTTCTGGAAGCTCTGGATCTCCTACGTCAATGGCAGTCTGTTCAGTGAGACAGGAGAAAAGTCTGGTCAGGTGGAGAAGTTGAAGAAGAATGCCAGACAAAGACAAAATGACTTTAAGGGCATGATTGAGGAGGTGACCCGTCGCCTGGTGCAGTTGGTTCGAGGTGCTCTGTTACCCTCTTCTCTTACTGAGCTCCAGCTGAGGCAGTATGGAGGCTGGGACACCAAAACTCCGCTCACTGGAGCTTGGCTCACACAGGTCATCCACACCGTCAGGTTGAGTCATGAGGCTCTGTCGGCTCTGGAGATTCCCAATGACCTGCTGCAGGTGATTCAGGATTTACTGCAGGACCTGCGTGTGCACTGCCTGCTGACCACACTACAGCACACTGAAGAGGATGTAAAGAGACTTGCTGAAAAAGAAGATTGGGTTGTGGACAATGAAGGAATCACATCACTGccgGCCCAGTTTGAGCAGTGTATGGTTCAAATGCTGCAGTCTCTGAAGGAGCCCATGGAGTGTAAACCTGGAGAGATCAATATCTTCAATCTTGATGTGGTTCAAGACAAAGCGTGTGAACAGTGTGTTTCTATTATGAAGGTCTTCATTAAGTGCCTTGAGCAGCTCAGCACCAAGACTGATGAAGACATCAACACCTCTCATTTATCTGTGGATTTGACTTCACCTGATCTTTTTGGAAGCATAAAGGAAGACTTTAGTTCAAAACCTGAACAGCGTCTTCTCATCATTCTCAGTAACTGTCAGTATCTGGAGAGACACACATTCCTCAATCTagcagagcacctggagaagAATGGCTTCACCATGGCAGACAAGATCATTAGGGTCAGCATAGATGCGCTGAGACAGCTGGATTATGATCTGTTTGAGATGTACATCGAGAAGAAGTCTGATCCTATCGTCGGCTCTCTGGAAACCGGGATCTACGCAGGTTATTTTGACTGGAAAGACTGCCTGCTTCCTACAGGCGTGAGGAGTTATTTGAAGGAGGCTTTGGTCAGCATCATCTCTGTTCATGCTGAGGTTTTCACAGTTTCCAAGGAGCTGGTTTCTCGTGTTCTTTCAAAGATCATCGAGGCTGTAGCAGAAGAAATGAGTCGCCTCATGCAGTGTGTGTCTTCTTTTAGTAAAAATGGTGCCTTGCAGGCGCGTCTGGAGATCTGTGCTTTGCGAGATGCTATAGAGCCCTATCTCTCATCAGAGAGCTGCACTAGTTTTAAGCAGGCATTGGAAGCGCTTCCACAGCTACAGAGTGGAGCTGACAAAAAACTCTTGGAGGAGCTACTGAATAAGTTTAAGAGCAGTATGAAGCTGCAGCTAAATTGCTTCAAGCCTGCCTCATTTCAGCCTGTAAAGCGATAAACCTTCACAAAGCGCCAACATTTCAATTACTCTTTTGCATTGTAACACTAAGAAAccatttcaattttaaaaaccattaaaaGCCAATTTAGTGCCACTAAAATAGCTTTTTCCTTTCAGAATAATTAACTTGACCAGTTGTACTGCCTCTTCATTCACCTTAATGATCACAGTTTtggtttaaactaaaataaattcatGTATGCTTACACTGA
>TCONS_00035700
GGTCCAAGCGATCGGTGCGCTCTCTCAATCTCCAGCCTGGGATCAAAAGAAAGGGCATGATTGAGGAGGTGACCCGTCGCCTGGTGCAGTTGGTTCGAGGTGCTCTGTTACCCTCTTCTCTTACTGAGCTCCAGCTGAGGCAGTATGGAGGCTGGGACACCAAAACTCCGCTCACTGGAGCTTGGCTCACACAGGTCATCCACACCGTCAGGTTGAGTCATGAGGCTCTGTCGGCTCTGGAGATTCCCAATGACCTGCTGCAGGTGATTCAGGATTTACTGCAGGACCTGCGTGTGCACTGCCTGCTGACCACACTACAGCACACTGAAGAGGATGTAAAGAGACTTGCTGAAAAAGAAGATTGGGTTGTGGACAATGAAGGAATCACATCACTGccgGCCCAGTTTGAGCAGTGTATGGTTCAAATGCTGCAGTCTCTGAAGGAGCCCATGGAGTGTAAACCTGGAGAGATCAATATCTTCAATCTTGATGTGGTTCAAGACAAAGCGTGTGAACAGTGTGTTTCTATTATGAAGGTCTTCATTAAGTGCCTTGAGCAGCTCAGCACCAAGACTGATGAAGACATCAACACCTCTCATTTATCTGTGGATTTGACTTCACCTGATCTTTTTGGAAGCATAAAGGAAGACTTTAGTTCAAAACCTGAACAGCGTCTTCTCATCATTCTCAGTAACTGTCAGTATCTGGAGAGACACACATTCCTCAATCTagcagagcacctggagaagAATGGCTTCACCATGGCAGACAAGATCATTAGGGTCAGCATAGATGCG
>TCONS_00035701
AATTCTTTTCGTTTCCTCATCACCTCTACCGATAGATCTTGAAAGAAGCGCACCTGTTTGCCTTCGGCATGATTGAGGAGGTGACCCGTCGCCTGGTGCAGTTGGTTCGAGGTGCTCTGTTACCCTCTTCTCTTACTGAGCTCCAGCTGAGGCAGTATGGAGGCTGGGACACCAAAACTCCGCTCACTGGAGCTTGGCTCACACAGGTCATCCACACCGTCAGGTTGAGTCATGAGGCTCTGTCGGCTCTGGAGATTCCCAATGACCTGCTGCAGGTGATTCAGGATTTACTGCAGGACCTGCGTGTGCACTGCCTGCTGACCACACTACAGCACACTGAAGAGGATGTAAAGAGACTTGCTGAAAAAGAAGATTGGGTTGTGGACAATGAAGGAATCACATCACTGccgGCCCAGTTTGAGCAGTGTATGGTTCAAATGCTGCAGTCTCTGAAGGAGCCCATGGAGTGTAAACCTGGAGAGATCAATATCTTCAATCTTGATGTGGTTCAAGACAAAGCGTGTGAACAGTGTGTTTCTATTA

Function

symbol description
exoc2 Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to act upstream of or within protein transport. Predicted to be part of exocyst. Orthologous to human EXOC2 (exocyst complex component 2).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006893 Golgi to plasma membrane transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0000145 exocyst cellular_component

KEGG:

id description
ko04014 Ras signaling pathway
ko05132 Salmonella infection
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-1160 Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to act upstream of or within protein transport. Predicted to be part of exocyst. Orthologous to human EXOC2 (exocyst complex component 2).

Ensembl:

ensembl_id ENSDARG00000055610

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035699 False 3076 mRNA 0.47 28 26572456 26624042
TCONS_00035700 False 797 mRNA 0.49 10 26576373 26588736
TCONS_00035701 True 543 processed_transcript 0.50 6 26584112 26588910

Neighbor

gene id symbol gene type direction distance location
XLOC_018110 si:dkey-25e12.3 coding downstream 21223 26543683 ~ 26551233 (-)
XLOC_018109 stx11b.2 coding downstream 35285 26535342 ~ 26537171 (-)
XLOC_018108 mthfd1l coding downstream 40289 26478197 ~ 26532167 (-)
XLOC_018106 akap12b coding downstream 105002 26407758 ~ 26467454 (-)
XLOC_018107 NA coding downstream 114075 26445903 ~ 26458381 (-)
XLOC_018112 NA coding upstream 7028 26631070 ~ 26708526 (-)
XLOC_018113 gmds coding upstream 84967 26709009 ~ 26822550 (-)
XLOC_018114 mylk4b coding upstream 203223 26827265 ~ 26866111 (-)
XLOC_018115 ftr79 coding upstream 296639 26920681 ~ 26937453 (-)
XLOC_018116 BX248515.2 coding upstream 335491 26959533 ~ 26962756 (-)
XLOC_017928 CU539064.1 misc downstream 16518755 10053405 ~ 10053701 (-)
XLOC_018103 BX470119.2 non-coding downstream 377615 26194726 ~ 26194841 (-)
XLOC_018102 BX470119.1 non-coding downstream 452997 26119339 ~ 26119459 (-)
XLOC_018092 CR352243.2 non-coding downstream 860041 25710791 ~ 25712415 (-)
XLOC_018088 BX322665.2 non-coding downstream 967171 25600105 ~ 25605285 (-)
XLOC_018118 BX248515.3 non-coding upstream 430053 27054095 ~ 27054220 (-)
XLOC_018129 NA non-coding upstream 1490722 28114764 ~ 28164152 (-)
XLOC_018130 NA non-coding upstream 1609235 28233277 ~ 28233592 (-)

Expression


Co-expression Network