XLOC_018112


Basic Information

Item Value
gene id XLOC_018112
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 26631070 ~ 26708526 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036846
AACTTAGGTATCATTTTCTGTCATCTCAGAAGCGAAATATACGGTAAAGGTAGTCAGAAATCGGCGCGTGCCAGCTTCCACGGGTTGCCTGGCGGTCACTGAGCCCCTCGCGTCGAGCACAACCGCTCTCTTGTATTCGGGCGTCCACGAGGCCTCGCGGTCCTTCATTCCAGATGCTCGAGCTCGGCCCACCGCGCGCAGCTTTGGGAGCAGTAACTCGGCCTTGTAAAGCAGCTCATGTTTAATCACCTCTGACGTCGGGCGCAGCTGGGCCACTGAACCCTGTCAGTGAAGACATTGCGCTGTGTGCGAAAATCCTCCATCGTGTTTATTTGTAATGGCGACACGGTTGTCCTCATCAAAGCAACAACAGATTCAAGAGACCTCAGTCAGCgAGTCGTATGAATTTGCACACCAATAGATGGCGGTAGATGACCGTATAAAAGCTTTGACTGCCTGCGCAGACCGTCTGAACTTACGGACTACATCACGCAAGGTTTGACGTCTTGATGCATACTctgatggtgatgatggtggtggtggtgatgataATATCCGCCTGCAGACGGGTGGAAGGAGGTGATCCCGTTAAAATTCAACATGAAGTCCTTCCGTTCTCCGACTGGGGAAGAATGTGTCGGATAGCGCGATAAACCAACTGGGAACAGATAAATACACGAGGTGAAGGCACAGTGAAAGGTCATGGAGTTTCATAAGTTCCTAACATGCCCTAAGgtctcacatacacacactcaccaaGCTAGAGAACATTGTGTCATCAGCACCTCCATGTCCTGTTGTATGTTCCTATAACCTGCACCACAGGACTTCTTTCATGATATGTCGGAAGATCTACAGAGTGATGACATTTTCGTCCTTGATATGTCCTGTTTGTTTCATTTCTGCCATGCTTTTGACTATTCAGCAAGCATTCAtcccatgtttgtgtgtgtatgtgagagagcgCAAGAGAgactgtgcatgtgtgcatgcgtgtgtgtgtttgacatccTGTAGGTGAATCAAAGTTCAGATGTTGTCTGGAGTGAGTGCAGAAGGTGAGAGAGTGGGTTGACACATCAGTCAGGTTTATATTGGCATTAAAATACCCAAGTGATTTACACAGAGTGGGTGGAGATAAGATCTCACtctgacagagagaaagagagagacgaCGATGCCACATGAACAGACTATTGAATAGCTAATATTTATCACAAGCATTGCTAACATcagtaaacataaaaaacacttCAAATCGTTGCTTTTTTACATTATACTGTatccaaataaatttaaaaaaactaatactattttgttttttttaaa
>TCONS_00036847
GTCAGTCACCGCGCCTGCGCCGTTATATTTTGAAATTAACGGTCAACTTAGGTATCATTTTCTGTCATCTCAGAAGCGAAATATACGGTAAAGGTAGTCAGAAATCGGCGCGTGCCAGCTTCCACGGGTTGCCTGGCGGTCACTGAGCCCCTCGCGTCGAGCACAACCGCTCTCTTGTATTCGGGCGTCCACGAGGCCTCGCGGTCCTTCATTCCAGATGCTCGAGCTCGGCCCACCGCGCGCAGCTTTGGGAGCAGTAACTCGGCCTTGTAAAGCAGCTCATGTTTAATCACCTCTGACGTCGGGCGCAGCTGGGCCACTGAACCCTGTCAGTGAAGACATTGCGCTGTGTGCGAAAATCCTCCATCGTGTTTATTTGTAATGGCGACACGGTTGTCCTCATCAAAGCAACAACAGATTCAAGAGACCTCAGTCAGCatTTATACAAAGGGGAAAAGGGGAACAACCACTTAATTGGTTTAAATTCACCCAGTCAAGgAGTCGTATGAATTTGCACACCAATAGATGGCGGTAGATGACCGTATAAAAGCTTTGACTGCCTGCGCAGACCGTCTGAACTTACGGACTACATCACGCAAGGTTTGACGTCTTGATGCATACTctgatggtgatgatggtggtggtggtgatgataATATCCGCCTGCAGACGGGTGGAAGGAGGTGATCCCGTTAAAATTCAACATGAAGTCCTTCCGTTCTCCGACTGGGGAAGAATGTGTCGGATAGCGCGATAAACCAACTGGGAACAGATAAATACACGAGGTGAAGGCACAGTGAAAGGTCATGGAGTTTCATAAGTTCCTAACATGCCCTAAGgtctcacatacacacactcaccaaGCTAGAGAACATTGTGTCATCAGCACCTCCATGTCCTGTTGTATGTTCCTATAACCTGCACCACAGGACTTCTTTCATGATATGTCGGAAGATCTACAGAGTGATGACATTTTCGTCCTTGATATGTCCTGTTTGTTTCATTTCTGCCATGCTTTTGACTATTCAGCAAGCATTCAtcccatgtttgtgtgtgtatgtgagagagcgCAAGAGAgactgtgcatgtgtgcatgcgtgtgtgtgtttgacatccTGTAGGTGAATCAAAGTTCAGATGTTGTCTGGAGTGAGTGCAGAAGGTGAGAGAGTGGGTTGACACATCAGTCAGGTTTATATTGGCATTAAAATACCCAAGTGATTTACACAGAGTGGGTGGAGATAAGATCTCACtctgacagagagaaagagagagacgaCGATGCCACATGAACAGACTATTGAATAGCTAATATTTATCACAAGCATTGCTAACATcagtaaacataaaaaacacttCAAATCGTTGCTTTTTTACATTATACTGTatccaaataaatttaaaaaaactaatactattttgttttttttaaa

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0022414 reproductive process biological_process
GO:0048477 oogenesis biological_process
GO:0035803 egg coat formation biological_process
GO:0044703 multi-organism reproductive process biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0007276 gamete generation biological_process
GO:0007281 germ cell development biological_process
GO:0007292 female gamete generation biological_process
GO:0048609 multicellular organismal reproductive process biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0019953 sexual reproduction biological_process
GO:0009988 cell-cell recognition biological_process
GO:0003006 developmental process involved in reproduction biological_process
GO:0032504 multicellular organism reproduction biological_process
GO:0035804 structural constituent of egg coat molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036846 False 1329 lncRNA 0.46 5 26631070 26708482
TCONS_00036847 True 1433 lncRNA 0.45 6 26631070 26708526

Neighbor

gene id symbol gene type direction distance location
XLOC_018111 exoc2 coding downstream 7028 26572456 ~ 26624042 (-)
XLOC_018110 si:dkey-25e12.3 coding downstream 79837 26543683 ~ 26551233 (-)
XLOC_018109 stx11b.2 coding downstream 93899 26535342 ~ 26537171 (-)
XLOC_018108 mthfd1l coding downstream 98903 26478197 ~ 26532167 (-)
XLOC_018106 akap12b coding downstream 163616 26407758 ~ 26467454 (-)
XLOC_018113 gmds coding upstream 483 26709009 ~ 26822550 (-)
XLOC_018114 mylk4b coding upstream 118739 26827265 ~ 26866111 (-)
XLOC_018115 ftr79 coding upstream 212155 26920681 ~ 26937453 (-)
XLOC_018116 BX248515.2 coding upstream 251007 26959533 ~ 26962756 (-)
XLOC_018117 itpk1a coding upstream 340997 27049523 ~ 27086143 (-)
XLOC_017928 CU539064.1 misc downstream 16577369 10053405 ~ 10053701 (-)
XLOC_018107 NA non-coding downstream 172689 26445903 ~ 26458381 (-)
XLOC_018103 BX470119.2 non-coding downstream 436229 26194726 ~ 26194841 (-)
XLOC_018102 BX470119.1 non-coding downstream 511611 26119339 ~ 26119459 (-)
XLOC_018092 CR352243.2 non-coding downstream 918655 25710791 ~ 25712415 (-)
XLOC_018088 BX322665.2 non-coding downstream 1025785 25600105 ~ 25605285 (-)
XLOC_018118 BX248515.3 non-coding upstream 345569 27054095 ~ 27054220 (-)
XLOC_018129 NA non-coding upstream 1406238 28114764 ~ 28164152 (-)
XLOC_018130 NA non-coding upstream 1524751 28233277 ~ 28233592 (-)
XLOC_018136 BX569801.1 non-coding upstream 1902746 28611272 ~ 28612322 (-)

Expression


Co-expression Network