Fish Transcriptome and Expression Database

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model fish

XLOC_018118 (BX248515.3)

Basic Information

Item	Value
gene id	XLOC_018118
gene name	BX248515.3
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007131.7
NCBI id	CM002904.2
chromosome length	55201332
location	27054095 ~ 27054220 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035715
AGGGATGAGCACCACTGGTATAGTATATGCCGGCAGCTTGCTCTCTGCAACTGTCatatggtcacccactgaagctacccggtcagtacctgaatgggagaccacatgggaatcgcctcatccagg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000099570

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00035715	True	126	rRNA	0.54	1	27054095	27054220

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_018116	BX248515.2	coding	downstream	91339	26959533 ~ 26962756 (-)
XLOC_018115	ftr79	coding	downstream	116642	26920681 ~ 26937453 (-)
XLOC_018114	mylk4b	coding	downstream	187984	26827265 ~ 26866111 (-)
XLOC_018113	gmds	coding	downstream	231545	26709009 ~ 26822550 (-)
XLOC_018112	NA	coding	downstream	345569	26631070 ~ 26708526 (-)
XLOC_018119	si:dkeyp-55f12.3	coding	upstream	36688	27090908 ~ 27092290 (-)
XLOC_018120	btbd7	coding	upstream	60654	27114874 ~ 27190393 (-)
XLOC_018121	si:dkey-85n7.7	coding	upstream	168629	27222849 ~ 27225878 (-)
XLOC_018122	asb2a.1	coding	upstream	241481	27295701 ~ 27311675 (-)
XLOC_018123	asb2a.1	coding	upstream	262458	27316678 ~ 27330383 (-)
XLOC_017928	CU539064.1	misc	downstream	17000394	10053405 ~ 10053701 (-)
XLOC_018107	NA	non-coding	downstream	595714	26445903 ~ 26458381 (-)
XLOC_018103	BX470119.2	non-coding	downstream	859254	26194726 ~ 26194841 (-)
XLOC_018102	BX470119.1	non-coding	downstream	934636	26119339 ~ 26119459 (-)
XLOC_018129	NA	non-coding	upstream	1060544	28114764 ~ 28164152 (-)
XLOC_018130	NA	non-coding	upstream	1179057	28233277 ~ 28233592 (-)
XLOC_018136	BX569801.1	non-coding	upstream	1557052	28611272 ~ 28612322 (-)
XLOC_018140	NA	non-coding	upstream	1806222	28860442 ~ 28863882 (-)
XLOC_018147	NA	non-coding	upstream	2372718	29426938 ~ 29429462 (-)

Expression

Co-expression Network