XLOC_018121 (si:dkey-85n7.7)


Basic Information

Item Value
gene id XLOC_018121
gene name si:dkey-85n7.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 27222849 ~ 27225878 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035719
ACCATTTGGCACAAAGGATACTTTAAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTGTATAGAAGAGGTTgttaaagagttaaattttatatCTCGATCAGCATCTGGACCCATCATCAAAGTTGTTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAATGCAGCCCAAAAGTAATGGACCTGGCCTCATCAAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTCAAGGAGTTTGCTAATACACAAGGAATTGAGGCAGACCTTAAAAAGCAAGTGATGAAAATTGCCATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGACCCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTAACGGGCATAATATATGCTCTGAATCTGAGCTACCCCAAGGAGCTTAAATATACTTGTTAAGTGTTTCAGAAGCTGTTTCTTGAACTTGATGGACTGAATCCCAGTGCAAAAGTAATGCGTCTCAAGAACAGCATTTTCTGAAGCCTCTACTTATTTCAAAGTACATTTTGCTCTTTATGTTGCAACtacattgttttgtattttgaagTCCACATGCTGATCTTTTTATTTCATACTGTTTATATGAATGGTGGcatttatatatgtttgtttataatattaaaatgttacatgtTTTACAATTAAGGTTAACTAATAACAAGTAGTTTGTAAAATATTCAATTTATAAGTTAATAGTTAGCTTTAAGTGTATCAATGCCTATAACTCTTGTTTTGATGGAATTCATTGTGATGGCATAGCTATGCATGCACGCACATTTTTGAAGGCAAAGCTGACGGGTCAGTTTGTTTATAATTTGTGAGACAGTACACATttgtgttttgtaaactttgagaagtgcaatatttaaaataaaacactgaaaactgtgtttctaaataaataaaaagctactgaaattaaaa
>TCONS_00035720
AGACCATTTGGCACAAAGGATACTTTAAGAACTGCAATTTCAGAACTAACATTTATGGTACATTTGCTTCCCACAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTATGTATGTTCATTCAATGCAGATCAACACAGTGATGTGGAAGGTCAAAGTGGGGATCTGTCTGATGAATGTCAAGATGACAATAATGATGTGACAGACCTGCCaaactgcatagaaaaaaaatagctttgttgtttctaaaactggaGAGCACTTTTAATGTATCTTACAGGTGTATAGAAGAGGTTgttaaagagttaaattttatatCTCGATCAGCATCTGGACCCATCATCAAAGTTGTTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAATGCAGCCCAAAAGTAATGGACCTGGCCTCATCAAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTTCAAGGAGTTTGCTAATACACAAGGAATTGAGGCAGACCTTAAAAAGCAAGTGATGAAAATTGCCATCATTGGTGATCTGTCAACTATGGAATTAAACCACAAGACGGGACCCATCATTGTTGAGGGAATCAGAATCCTGATTGGAATGGATATCTCAAGGTGTTGTGCTCTGCTAACGGGCATAATAT
>TCONS_00035721
AGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGTTGTTGCAGATAAAATGGGCAAGAAATAAGGGATATCTTGGAGCGCTGGCCTGCATTATCAGATGCAACACAGATAAATGAAGAATTCAAGAGGATAACCACTGTAGGTCTTGAATCCACATTTATGGCCAAACTTGACAAATGCAGCCCAAAAGTAATGGACCTGGCCTCATCAAGGGGAGGAGCTAAAGGGGAAAGAATCAGAAGGATTAAGGATATGCTTCTTGAGAACAATGCAGTTGAAGTATGGAGAGAAGTAGCCATTCACTGTCTTGTTGTCTATCTTGGAGAGAAAGAAGAGGATCTTTT
>TCONS_00035722
AGACCATTTGGCACAAAGGATACTTTAAGAAGCCGAAAACATACTCCTCACTCATTGCATGACTTCAAGGCAGACATAATAAAAAGGTATGTATGTTCATTCAATGCAGATCAACACAGTGATGTGGAAGGTCAAAGTGGGGATCTGTCTGATGAATGTCAAGATGACAATAATGATGTGACAGACCTGCCaaactgcatagaaaaaaaatagctttgttgtttctaaaactggaGAGCACTTTTAATGTATCTTACAGGTGTATAGAAGAGGTTgttaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095893

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035719 False 1221 mRNA 0.36 7 27222849 27225876
TCONS_00035720 False 871 mRNA 0.39 6 27223421 27225878
TCONS_00035721 False 368 mRNA 0.41 4 27224046 27225064
TCONS_00035722 True 280 processed_transcript 0.37 2 27224812 27225878

Neighbor

gene id symbol gene type direction distance location
XLOC_018120 btbd7 coding downstream 32456 27114874 ~ 27190393 (-)
XLOC_018119 si:dkeyp-55f12.3 coding downstream 130559 27090908 ~ 27092290 (-)
XLOC_018117 itpk1a coding downstream 136706 27049523 ~ 27086143 (-)
XLOC_018118 BX248515.3 coding downstream 168629 27054095 ~ 27054220 (-)
XLOC_018116 BX248515.2 coding downstream 260093 26959533 ~ 26962756 (-)
XLOC_018122 asb2a.1 coding upstream 69823 27295701 ~ 27311675 (-)
XLOC_018123 asb2a.1 coding upstream 90800 27316678 ~ 27330383 (-)
XLOC_018124 serpina10a coding upstream 145516 27371394 ~ 27381691 (-)
XLOC_018125 prph2lb coding upstream 158260 27384138 ~ 27390258 (-)
XLOC_018126 zbtb25 coding upstream 481888 27707766 ~ 27711970 (-)
XLOC_017928 CU539064.1 misc downstream 17169148 10053405 ~ 10053701 (-)
XLOC_018112 NA non-coding downstream 514323 26631070 ~ 26708526 (-)
XLOC_018107 NA non-coding downstream 764468 26445903 ~ 26458381 (-)
XLOC_018103 BX470119.2 non-coding downstream 1028008 26194726 ~ 26194841 (-)
XLOC_018129 NA non-coding upstream 888886 28114764 ~ 28164152 (-)
XLOC_018130 NA non-coding upstream 1007399 28233277 ~ 28233592 (-)
XLOC_018136 BX569801.1 non-coding upstream 1385394 28611272 ~ 28612322 (-)
XLOC_018140 NA non-coding upstream 1634564 28860442 ~ 28863882 (-)
XLOC_018147 NA non-coding upstream 2201060 29426938 ~ 29429462 (-)

Expression


Co-expression Network