XLOC_018133 (pigh)


Basic Information

Item Value
gene id XLOC_018133
gene name pigh
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28399593 ~ 28404443 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035740
gaacagaccctgGGAGTTTTCAACCCCAGTCCAGTAGATGGCGAAAACGCACCTGTATGTTATTTTGCCAACGTCACATTATCATAAGAAGAAGATGGTTTCACTGTTGGtggaaaaataataatctaaGCAAAACTATTTATTCTGAAGtctttattaatgtaattttccGAACGCGAAATAACCAGCAGTGATCAAGATGGCCGACGAAGAGTTCACAGACATAAATGGCAACTGGATTTCTTTAGACTGTCAAACGCACTCTTCTTTCTGCAGAGAGTTTACTGTTACCTCACCCAAACTGTCCTTGCGCAAGGTGATGGTGTACACCTGCTGTGTGTGGTTATTTGCTTATGCTGTGTTCTTCTTCACCCAGAACACGGCGGTTCTGTCAAGTGCCATCATCCTCACTTTAGTTGGGATGGTGATTCATATTCACTTTGTGAAGGTGGACCATGAGACCCTTCTCATAATAGGCTCTCTGGGTGTCCAACTGTCCTCGTCTTATGCCTCTGGACGAGAAAGCACGACTTTCATCGAGATGAGCAAGCTGAAAGACATCGTCATAAATGAGGCTGTTTATATGCACAACATCATATACTATCTGTGCATTCTCATCAAGGACCCAGCAGACCCTGAGACGGTGACCAGTGTTGTTCCTCTCTTCCAGAGTTCAAAGCCTCGGCTCAATTGTTTGATTCAAGTGTACAAGAGCTGTCAAGAAATTCTAGCACAGAGCAGATGACGCAGAGAGGCTTTCTTTGAAGATGAATGAAGATTGGAAAACTCCAGAACGAATCATAAGCACATTGTTGGTAGCTTTTTTGTATTGTCAGTAATACACAATGCATTTTGTTACATGCAGAAGTTTTTAGATAGGCTTCGCATTCAAAAACGTTTGTACATAACAGTATTCTAGcctcatttaaaacattatttaatgatgagccatttagttttttaggatGTGTTCACACTTGGTTTGCATGATTTTGTCAAAAAAACTGACAACGGAATATTttcaatgtatattttaatatgaagACTTGAAAAGATCTATTCagaaataattcattattttagattgattagggtgattattgctattattattattattttccattttagGGGAGCACATTTGGATCAAATATAACAAATCACAAGAAAAAATAAGTACAAAAGAACATACATTGGCCTATGGTTCACTGGTGAGACTaacaatacagaaataaatatgaCACTGAAACGAACACTGTAtggtataaatatttaaatacaagtaatctttgttaaagctacagaCGTAATtgcttaaatgctttaaacatgcTTTTAACAGGGTGTCCCCGAGGTCTTACAAAGTAATAAAGTGTCTTaagtttcaaaaaagaaaattttaggccttaagtTTGAAATTCACTGCAATATTGTGCTGCGagtcttaaatcattttacacAGGTCTTATTTTACTATTTCCATTTAAAGCTACCCTATCGGGCTGACACCCAATCACCAATAATCAGTCTTAATTTTTtggtttatatttagttttttttattgttattatttttattatttaaaaagatacATGTCACAtaagctgttagacatttttacagctaattaaattccctaatcagggaaagaaaactaaagcaacgcATCcttttacatgatcttccattaatacaaaaactatttacagaagtaaccgGGCCATTCAAAATTCTTAGTGTTTAGAGCTGTATCAGTCTAAAATTTCACTCATATGCTTTtgaaagggtcttaaaaagtcttaagtttGACTTGAAGAAACCCTGTTTAAAACCCTTTTTTAGAAATGCCTTAAAAACACCtggaaataataaacaataaatttcTTATGATTAAACAATAAAATTCGGGGTGCTGGTCAACCATAATACAGACTCAACATTGTAGATCCTGCGATGAGACAATTGCAAATGtacacattgcgatattaatgctgaaatgatatattgtgcatcccagCAAGTGGATCAACCAGATAAATCTTGGTGCATTCCCAAAAACACAAGATGTGACCATTAAAAGGATTGATTGATGAATTATGTTCATATTCTGAACCCATAGTGAAACGGGACCACGTGTGTAATAAATTTTTTGCTCTGCACCAAAAGAACAGAACAGAGCTCTACaataagtgtgaacacaccctaagTGTTTTCATTCCCTTTAAAATGCCTCTGTAAAATGACACTCCAACCAATTTTTAGATTTATGCACTGAATCATTTAGTGTAGAACTAAATTACGTGTAAGTTTTAAGAACAGGAATAAGTTTTAGCAGAAAACAGAAATAGTTTTTTCTTATAGCATGTAGTCctgtaatgtttatttagcatCTCAGAGAAATAAGATTATAGTTTACTTTATAGAAATGAGTATTTTTCTGTTTAGTGTcatatatgtttaataataagTTCTAAGTTATTTCCTTCTGACGTTAAGTGACCACTAGGGGGACATATGTGCCAAATTTTTAAGCAACCTACAAAATCAGtttgattaaaattaataaattaactaattatatcatgtattttactattttattaaattctaAGTTTTCTTAAAAAACTGAAGTAGTTTTTTCTTGTAGTCTGTAACTCCAGTAATGTTAATTTACAACATCAAAGAAATAAGATTACAGTATACGTTATggaaattagtattattattcttCTGTTAGTATCCTATGTGTTATAAGTTATGTTACTTTCTTCTGACATTAAATGACCACTAGAGGGACATATGTGCCAAATATTGAAACGAACTACAAAATCGATTAAATAAATAGCAATAAGCATGATATAATTATTTCATATATGGTACTAAGTTAATATTGCAATTTAGTAacagtattttttaatataaattagctCTTTTCAAGttatctttttttcatttatttatttttcctgatTAGAAACGGTAACATTCATTACACATTTTCATGGAACTGATATgtctgataaataaaataaacagacttTATTTAAACCGTTTATAGAGAATCGGCGTTTTCTTGTGCTCTGAAAGCAGATCTTATT
>TCONS_00035741
TCATAAGAAGAAGATGGTTTCACTGTTGGtggaaaaataataatctaaGCAAAACTATTTATTCTGAAGtctttattaatgtaattttccGAACGCGAAATAACCAGCAGTGATCAAGATGGCCGACGAAGAGTTCACAGACATAAATGGCAACTGGATTTCTTTAGACTGTCAAACGCACTCTTCTTTCTGCAGAGAGTTTACTGTTACCTCACCCAAACTGTCCTTGCGCAAGGTGATGGTGTACACCTGCTGTGTGTGGTTATTTGCTTATGCTGTGTTCTTCTTCACCCAGAACACGGCGGTTCTGTCAAGTGCCATCATCCTCACTTTAGTTGGGATGGTGATTCATATTCACTTTGTGAAGGTGGACCATGAGACCCTTCTCATAATAGGCTCTCTGGGTGTCCAACTGTCCTCGTCTTATGCCTCTGGACGAGAAAGCACGACTTTCATCGAGATGAGCAAGCTGAAAGACATCGTCATAAATGAGGCTGTTTATATGCACAACATCATATACTATCTGTGCATTCTCATCAAGGACCCAGCAGACCCTGAGACGGTGACCAGTGTTGTTCCTCTCTTCCAGAGTTCAAAGCCTCGGCTCAATTGTTTGATTCAAGTGTACAAGAGCTGTCAAGAAATTCTAGCACAGAGCAGATGACGCAGAGCAGAGGCTTTCTTTGAAGATGAATGAAGATTGGAAAACTCCAGAACGAATCATAAGCACATTGTTGGTAGCTTTTTTGTATTGTCAGTAATACACAATGCATTTTGTTACATGCAGAAGTTTTTAGATAGGCTTCGCATTCAAAAACGTTTGTACATAACAGTATTCTAGcctcatttaaaacattatttaatgatgagccatttagttttttaggatGTGTTCACACTTGGTTTGCATGATTTTGTCAAAAAAACTGACAACGGAATATTttcaatgtatattttaatatgaagACTTGAAAAGATCTATTCagaaataattcattattttagattgattagggtgattattgctattattattattattttccattttagGGGAGCACATTTGGATCAAAT

Function

symbol description
pigh Predicted to enable phosphatidylinositol N-acetylglucosaminyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex. Is expressed in nervous system; pancreatic system; and pronephric duct. Orthologous to human PIGH (phosphatidylinositol glycan anchor biosynthesis class H).

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko00333 Prodigiosin biosynthesis

ZFIN:

id description
ZDB-GENE-040718-303 Predicted to enable phosphatidylinositol N-acetylglucosaminyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex. Is expressed in nervous system; pancreatic system; and pronephric duct. Orthologous to human PIGH (phosphatidylinositol glycan anchor biosynthesis class H).

Ensembl:

ensembl_id ENSDARG00000038348

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035740 False 3098 mRNA 0.33 5 28399593 28404443
TCONS_00035741 True 1074 mRNA 0.38 5 28401539 28404362

Neighbor

gene id symbol gene type direction distance location
XLOC_018132 vps18 coding downstream 38019 28354269 ~ 28361574 (-)
XLOC_018131 ino80 coding downstream 47241 28266327 ~ 28352352 (-)
XLOC_018130 NA coding downstream 166001 28233277 ~ 28233592 (-)
XLOC_018129 NA coding downstream 235441 28114764 ~ 28164152 (-)
XLOC_018128 syndig1l coding downstream 534629 27822044 ~ 27864964 (-)
XLOC_018134 wdr21 coding upstream 14041 28418484 ~ 28434078 (-)
XLOC_018135 rgs6 coding upstream 107498 28511941 ~ 28642061 (-)
XLOC_018136 BX569801.1 coding upstream 206829 28611272 ~ 28612322 (-)
XLOC_018137 sipa1l1 coding upstream 245582 28650025 ~ 28768114 (-)
XLOC_018138 rab15 coding upstream 378460 28782903 ~ 28800999 (-)
XLOC_017928 CU539064.1 misc downstream 18345892 10053405 ~ 10053701 (-)
XLOC_018118 BX248515.3 non-coding downstream 1345373 27054095 ~ 27054220 (-)
XLOC_018116 BX248515.2 non-coding downstream 1436837 26959533 ~ 26962756 (-)
XLOC_018112 NA non-coding downstream 1691067 26631070 ~ 26708526 (-)
XLOC_018140 NA non-coding upstream 455999 28860442 ~ 28863882 (-)
XLOC_018147 NA non-coding upstream 1022495 29426938 ~ 29429462 (-)
XLOC_018151 BX248136.1 non-coding upstream 1090857 29495300 ~ 29495435 (-)
XLOC_018156 NA non-coding upstream 1283192 29687635 ~ 29691465 (-)

Expression


Co-expression Network