XLOC_018135 (rgs6)


Basic Information

Item Value
gene id XLOC_018135
gene name rgs6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28511941 ~ 28642061 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035745
CAGAAAGAGAGACCCAGCAATCAAGCATGGCTCAGGCCTCTCAGGACCAAGGTGCGGTGGGCATAGCCGACCCAGATGAGGACTCACCCAACATGATTGCATACAGGAAGATCGAGGACATCATCACACGCCTCCAAGATGAGGCTGAAGGAGTGCCTGTCAGAACCGTCAAGAGCTTCCTCACCAAGATTCCTAATGTGGTTACAGGTTCAGATATTGTTCAGTGGATGATGAAAAACCTCAACATGGAAGATCCGGCGGAGGCCATACACGTTGGCAGCCTGATCGCCGCCCAAGGGTACATCTTCCCCATCTCTGATCATGTTCTCACTCTCAAGGATGATGGGACGTTTTACCGTTTTCAGGCTCCATACTTTTGGCCCTCTAACTGCTGGGAGCCAGAGAACACCGACTACGCCATCTATCTGTGCAAGCGGACCATGCAGAACAAGACCCGGCTGGAGCTGGCAGACTATGAGGCGGAGAATCTAGCGCGACTACAGAGGGCTTTTGCCAGGAAGTGGGAGTTCATCTTCATGCAGGCTGAGGCTCAGGTCAAAATCGACAGGAAAAAAGACAAAACGGAGAGGAAGATTCTGGATAGTCAAGAGAGAGCCTTCTGGGATGTTCACCGTCCTGTGCCTGGGTGTGTCAACACTACGGAGATGGACATCAGGAAGTGTCGTCGCCTGAAGAACCCTCAGCGAGTGAAAAAGTCAGTGTATGGAGTAGTGGACGACACACAGACTCAGAGTCCTGTTCACACACCTGCACAGCAGAGCAGCAAGGACACCAAAGAGGATGTAGAGAAAGAGattctgttCTTAAACACTCAGTTGGATCGGCACTGTATGAAAATGTCCAAAGTTGCTGAGACATTGATGAGCTACACAGAGCAGTATCTTGACTATGACCCTTTTGTGGCAGTACCAGAACCATCAAACCCCTGGATTAGCGATGATGCCACTTTCTGGGAGCTAGAAGCCAGTAAGGACCCAAGTCAACAGCGAGTAAAGAAGTGGGGTTTCTCATTGGACGAGGCTTTAAAGGACCCCGTGGGCCGTGAGCAGTTTCTTAAATTCCTGGAGTCCGAATTCAGCTCTGAAAACCTCCTATTCTGGTTGGCGGTACAGGATCTGAAGTGTCGCCCCCTGCAGGAAGTGGCGTCTCGTGCTCAGGAGATCTGGCAGGAGTTTCTTGCCGAGGGAGCTCCAAATGCCATCAATCTAGACTCACACAGCTACGAGCGCACTAGCCAGAATCTCAAAGACCCAGGACGCTACAGTTTTGAAGATGCCCAGGACCACATCTACAAGCTGATGAAGAGTGACAGCTACCCTCGATTCCTGCGCTCCAATGCTTACCAGGACCTCCTGCTGGCCAGAAAGAAGCCTGAGACAGAGCAAGGCCGTCGCACATCCCTGGAGAAATTCACTCGCAGTGTGGGCAAATCACTGACAAGTAAACGGCTGACAGGCCTCATGCAGTCCTCCTGAC
>TCONS_00035746
cctccctccctgtttcTGACACTCTCTCACACTCAGCTGCACACATGCCAGGATCCTTCCTCACACTGTACCTGAACACTCCACTCCAGTCCACGCAGCGACCACCCACGCCGGTCTCCAGTGCGCGAGAGAGGCGGACAGAGTGGAAGAAACCCCCCGCTGAGTCTCTTCATCATTTTTTCCTCACCAACACCCCATCATCATCCTCCTCATCCCAGACCCTTCTCGCCAGTTAGATCATGAACCTGCTCTTTTCTGGTTGCTAAGGAGGAGGAAATCGAGCTTCGGGAGTGGACGAGGCGGTACTTACAAAGGTATTGCGCTCTTTCAGTCAGCAGttgtttgtgtgtgattgtgcTGCTGTAAACTTATAGCAATATTCGGACCCGCAGGAGTGATCAATTGTCATGTCCAGTGCTGGATTCGAGTGGCTCCCGAAGTGCTGACACAGAAAGAGAGACCCAGCAATCAAGCATGGCTCAGGCCTCTCAGGACCAAGGTGCGGTGGGCATAGCCGACCCAGATGAGGACTCACCCAACATGATTGCATACAGGAAGATCGAGGACATCATCACACGCCTCCAAGATGAGGCTGAAGGAGTGCCTGTCAGAACCGTCAAGAGCTTCCTCACCAAGATTCCTAATGTGGTTACAGGTTCAGATATTGTTCAGTGGATGATGAAAAACCTCAACATGGAAGATCCGGCGGAGGCCATACACGTTGGCAGCCTGATCGCCGCCCAAGGGTACATCTTCCCCATCTCTGATCATGTTCTCACTCTCAAGGATGATGGGACGTTTTACCGTTTTCAGGCTCCATACTTTTGGCCCTCTAACTGCTGGGAGCCAGAGAACACCGACTACGCCATCTATCTGTGCAAGCGGACCATGCAGAACAAGACCCGGCTGGAGCTGGCAGACTATGAGGCGGAGAATCTAGCGCGACTACAGAGGGCTTTTGCCAGGAAGTGGGAGTTCATCTTCATGCAGGCTGAGGCTCAGGTCAAAATCGACAGGAAAAAAGACAAAACGGAGAGGAAGATTCTGGATAGTCAAGAGAGAGCCTTCTGGGATGTTCACCGTCCTGTGCCTGGGTGTGTCAACACTACGGAGATGGACATCAGGAAGTGTCGTCGCCTGAAGAACCCTCAGCGAGTGAAAAAGTCAGTGTATGGAGTAGTGGACGACACACAGACTCAGAGTCCTGTTCACACACCTGCACAGCAGAGCAGCAAGGACACCAAAGAGGATGTAGAGAAAGAGattctgttCTTAAACACTCAGTTGGATCGGCACTGTATGAAAATGTCCAAAGTTGCTGAGACATTGATGAGCTACACAGAGCAGTATCTTGACTATGACCCTTTTGTGGCAGTACCAGAACCATCAAACCCCTGGATTAGCGATGATGCCACTTTCTGGGAGCTAGAAGCCAGTAAGGACCCAAGTCAACAGCGAGTAAAGAAGTGGGGTTTCTCATTGGACGAGGCTTTAAAGGACCCCGTGGGCCGTGAGCAGTTTCTTAAATTCCTGGAGTCCGAATTCAGCTCTGAAAACCTCCTATTCTGGTTGGCGGTACAGGATCTGAAGTGTCGCCCCCTGCAGGAAGTGGCGTCTCGTGCTCAGGAGATCTGGCAGGAGTTTCTTGCCGAGGGAGCTCCAAATGCCATCAATCTAGACTCACACAGCTACGAGCGCACTAGCCAGAATCTCAAAGACCCAGGACGCTACAGTTTTGAAGATGCCCAGGACCACATCTACAAGCTGATGAAGAGTGACAGCTACCCTCGATTCCTGCGCTCCAATGCTTACCAGGACCTCCTGCTGGCCAGAAAGAAGCCTGAGACAGAGCAAGGCCGTCGCACATCCCTGGAGAAATTCACTCGCAGTGTGGGCAAATCACTGACAAGTAAACGGCTGACAGGCCTCATGCAGTCCTCCTGA
>TCONS_00036477
CCTTCTCGCCAGTTAGATCATGAACCTGCTCTTTTCTGGTTGCTAAGGAGGAGGAAATCGAGCTTCGGGAGTGGACGAGGCGGTACTTACAAAGACACAGAAAGAGAGACCCAGCAATCAAGCATGGCTCAGGCCTCTCAGGACCAAGGTGCGGTGGGCATAGCCGACCCAGATGAGGACTCACCCAACATGATTGCATACAGGAAGGT

Function

symbol description
rgs6 Predicted to enable GTPase activator activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Is expressed in nervous system and trigeminal placode. Orthologous to human RGS6 (regulator of G protein signaling 6).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-31 Predicted to enable GTPase activator activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Is expressed in nervous system and trigeminal placode. Orthologous to human RGS6 (regulator of G protein signaling 6).

Ensembl:

ensembl_id ENSDARG00000015627

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035745 False 1497 mRNA 0.52 17 28511941 28638871
TCONS_00035746 False 1944 mRNA 0.52 18 28511942 28642061
TCONS_00036477 True 209 lncRNA 0.53 2 28638760 28641841

Neighbor

gene id symbol gene type direction distance location
XLOC_018134 wdr21 coding downstream 77863 28418484 ~ 28434078 (-)
XLOC_018133 pigh coding downstream 107498 28399593 ~ 28404443 (-)
XLOC_018132 vps18 coding downstream 150367 28354269 ~ 28361574 (-)
XLOC_018131 ino80 coding downstream 159589 28266327 ~ 28352352 (-)
XLOC_018130 NA coding downstream 278349 28233277 ~ 28233592 (-)
XLOC_018137 sipa1l1 coding upstream 7964 28650025 ~ 28768114 (-)
XLOC_018138 rab15 coding upstream 140842 28782903 ~ 28800999 (-)
XLOC_018139 max coding upstream 190701 28832762 ~ 28842604 (-)
XLOC_018140 NA coding upstream 218381 28860442 ~ 28863882 (-)
XLOC_018141 srsf5b coding upstream 227908 28869969 ~ 28884829 (-)
XLOC_017928 CU539064.1 misc downstream 18458240 10053405 ~ 10053701 (-)
XLOC_018129 NA non-coding downstream 347789 28114764 ~ 28164152 (-)
XLOC_018118 BX248515.3 non-coding downstream 1457721 27054095 ~ 27054220 (-)
XLOC_018116 BX248515.2 non-coding downstream 1549185 26959533 ~ 26962756 (-)
XLOC_018112 NA non-coding downstream 1803415 26631070 ~ 26708526 (-)
XLOC_018147 NA non-coding upstream 784877 29426938 ~ 29429462 (-)
XLOC_018151 BX248136.1 non-coding upstream 853239 29495300 ~ 29495435 (-)
XLOC_018156 NA non-coding upstream 1045574 29687635 ~ 29691465 (-)
XLOC_018158 NA non-coding upstream 1147881 29789942 ~ 29834538 (-)

Expression


Co-expression Network