XLOC_018141 (srsf5b)


Basic Information

Item Value
gene id XLOC_018141
gene name srsf5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28869969 ~ 28884829 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035759
GAGCTGTTCGCACGCAGACACGACACATTCACAGGAGAACCATTAAACAGAGAGGATGAGCGGTTGTCGTATTTTCATCGGTCGGTTAAACCCCTCTGCGCGGGAGAAGGACGTCGAGCGCTTCTTCAAGGGCTACGGGAGAATCAGAGACATCGACCTCAAACGAGGCTTCGGTTTTGTGGAATTTGATGATCCAAGAGATGCTGAAGATGCTGTTTATGAGCTTGATGGAAAAGAGCTCTGCAATGAGAGagtGACCATTGAACATGCACGCGTTCGTCTGCGTGGAGGCCGAGGTCGTGGGGGTGGAGGACGTTTCCCTGCTCGGTATGGTCGAGGCTCTCAGGACAGCCGAAGGAACCCTCCGCCAATGCGCACAGAGAATCGCCTCATCGTGGAGAATTTATCATCAAGAGTGAGCTGGCAGGATTTAAAGGATTTCATGAGACAAGCTGGAGAGGTTACTTTTGCAGATGCCCATCGGCCAAATCTGAATGAAGGCGTGGTTGAATTTGCTTCTCATAGTGATCTGAAAAATGCCCTGGAGAAGCTGTCTGGGAAGGAGATCAATGGAAGGAAAATCAAACTTGTTGAGGCGTCCAGGAAAAAATCCAGATCTCGCTCTCGCTCGAACAGCTCATCCCGTTCTCGTTCCCGAGGCCGCTCTGCTTCCCGCTCCCGAAGCCGTTCTCGTTCTCACAGCCCTAAATCCCACAACCGCTCCAGAAGTCGCTCCCGTTCAGCCAGCGCTTCTCCTGTGCGGCCCAAAGAAGCTCCTCGTCCTGAATCAGCATCTCCTCCAGCCTCAGCACAGCATCCACCTCGTTCTCGCTCACGATCCCGCTCCCGCTCTCGTTCCCGTTCTCGCTCCCGATCCCGCTCCCGCTCCCCATCCACTGACAGCCGCCATTGAGTCTGAGGCTGAGGACGTCCCATCACAGCAATATGTCCTGTCTTCTGGTCAGTTTAGGTCCTAGAAAAGGGGGGACTGATTCTCTCCATGCCAGGAGTTTTACAACAAAGGCTCTGATGGTAAATGAAGGGTATTTGACAGGAGAGTTGCTTTAAATCAGGACTATACagctgtatttgttttgtttttgtttctttttttaatgggttttctcacccacaaatgaaaatttaCGCTCGTTTTACTCTGCCTCAAAGGAATTTTCCAATTTTTTGGGAAATATgctaattttacaagtcacctaaagTTTAAGCAGTtgagttttgccattttttttaatccattcagccgatttcCAAGTCTGGCTGGAACaccttttagcttagcataaatcattgaatcagattagaccgttagcgtCTTGCTTCAAAAATTCAAAAGAGCTTTTATAATTGTCCTTTTTAAATCATGACAGCTGCTATTTTCTAGTCCAATATGACTAGAAACTTTACTCTCGTTCCAGagccaagctttaaataggaaaattatcaaaggTGTTTTTaaatttgagcaagatgctaatggtctaatccaattcaatgatttatgctaagctaagctaaaagtgctcccaccagacttGGAAATCGGCTGAATGGAGTTTAAACTCAACTGTTTGACTCTAGGAGTGTTATAGAATGAGCCTACTTTCCTTACAGTGGTTCCAatagatttgagttttgtttttccgttgaacaaatgaaatattttgaagaatggtggaAAGCTGTTGGCATCTGTAGTAcatactattaaagtcaatggccAATAGTTTCAAATTATTctttacaaatgtgtgtgtgttcagcagaaaataaactcaaacagggttgaaacttgagggtgagtaatttaTGGCTTGACTTTGATTTTTGGGAGAATTTTACTTTTAGGTTCATGTCTGAAGTGCGTAGAATTGTGATTTTTGAGGTTTGTTTAAGGTTGAGATTCTGTAattgtataaatacatttatggaCAAGTCAGTAAGATGGTTTTCAGTTACTTTGACCATGATTATTGCAAAGTATTATGAGAAGAAAGGCATTTACCAACTCCCAAAGTTTTATGGTTACAAATTCCAAGATCAAGCAAAGCAAGTAGTCTTGTCATTTCAgatctaaataataaaatcaatgtcTTGAGTTCCTGATACTTTGCAGGTCATTCTGATACACTAATctttaaataactgtttatttttgttacgtgattgattgattggttgattacaTGTGCAGATTGTATGTAACGTGGATGCTTAAATTATAATTGAAGTTAAAGATTTGAGTTTCCTCCACAGTGCATGAATAAAGAAATCTTGTTCTCCATTAGTGAACCCCCTATCATACTAGCCTGTTCATATGTGCTTAATAACTCATTGTGTGTACACATTTTAGTGTggtattattcattctttttttttatgggaTTGTTTTGGGGGGGTAGTTCTTCTATTTACACAACCGAATGAGATTTTGATATGGCTTTGATATGTATTACTTCAGGTTCTGTCTGGATATGTTTTGATGCATGTTCTTCATTTATTTGAATATGAATCACCTTTCTGTACCATGATGGAAATATTATATAAGAAAATGCTTTTGAACATTTATAAGGTTTGTGtagcactgtaaaaataataaaaacaaaagttccTCGAAAGCCA
>TCONS_00035760
CTTATACACAATGTAATTTGAGagacaattaaacacattttattaggCGCAACTAAATATTCCACTATTTGGGctgtgcattattattatttttttcagtttgatttGAATGTTTTATGTGTAGCGTACTGTACTTGGTCCAGGGTTGAGCTTGAGCTGAGATGTTCTCGGACCCCAACTTTCATTGTTCATCAACTTTGATACTTCATAGTAAGTGTAAAAATGATCATCTAACTCCAGAATGCTGATGTGCTGTGTGTAGGATTTAAAGGATTTCATGAGACAAGCTGGAGAGGTTACTTTTGCAGATGCCCATCGGCCAAATCTGAATGAAGGCGTGGTTGAATTTGCTTCTCATAGTGATCTGAAAAATGCCCTGGAGAAGCTGTCTGGGAAGGAGATCAATGGAAGGAAAATCAAACTTGTTGAGGCGTCCAGGAAAAAATCCAGATCTCGCTCTCGCTCGAACAGCTCATCCCGTTCTCGTTCCCGAGGCCGCTCTGCTTCCCGCTCCCGAAGCCGTTCTCGTTCTCACAGCCCTAAATCCCACAACCGCTCC
>TCONS_00035761
ATTTATTGACTGACTCCATTTTGTGTGAGGAGCTGTTCGCACGCAGACACGACACATTCACAGGAGAACCATTAAACAGAGAGGATGAGCGGTTGTCGTATTTTCATCGGTCGGTTAAACCCCTCTGCGCGGGAGAAGGACGTCGAGCGCTTCTTCAAGGGCTACGGGAGAATCAGAGACATCGACCTCAAACGAGGCTTCGGTTTTGTGGAATTTGATGATCCAAGAGATGCTGAAGATGCTGTTTATGAGCTTGATGGAAAAGAGCTCTGCAATGAGAGagtGACCATTGAACATGCACGCGTTCGTCTGCGTGGAGGCCGAGGTCGTGGGGGTGGAGGACGTTTCCCTGCTCGGTATGGTCGAGGCTCTCAGGACAGCCGAAGGAACCCTCCGCCAATGCGCACAGAGAATCGCCTCATCGTGGAGAATTTATCATCAAGAGTGAGCTGGCAGCCTGACTGTTGTGTCGTATGGAAGAGCTCGCTAATGGTGGAGTTAAGCCCTACAGGGTCCCTCTCTCTGCTTAATCCACTCCCATTGAGTCCCACGACTAGTAGACTTCCGCCGATCGCATGAGAGGTCTCTGAGAGTGATGCCGTCTCGCTCTAGACGCAGCGGCCGCCGCTACAAAGCGCAGTTTGTGACGGTGCCGAgctgaaagagagagacagagagcgaATTCGAGAGAGAGAGGGGCAGAGAGAGCGAAAGAATGAGAGAAACAGAGCGAATCTCTGGCAAACACAGTCAATCGAGGGGTTCGGTAATTTGAGAGCCTTCGATCGGTGTATACTGCACTTTGGTGGTCCCACACACACGTGGCCGTGGATAAAATCTCCAGGTTATCACCCCAGCCCGATGGGTACGTTCCCAGGTATTAGTCTATAATCTCTTCCTCGCTGTTGACGCTCGGTGCCCTTGAGGGGACGGCACAAATAGGGTACGATTGATGGAAGGAAAGCCTGTGCTCTGCCACACTGTAATCACTTGTGTTTTGGTAAGAATGCATTTGCCATGTAAATGTACCTTTTACTAAATCTGGGGCCTTTTTATTACGAGCTTTTTAGTTCCTCTTTTAGTTTGGTGGTCCGAGAATGTCAAAGCGTTCCAAAAATCTCTCTGGTCAACATTGTTCCTTTGATTGATTTTGGCCCCATGAGACACAGAGGTCTTTGTGTTTGCACATTTCAGAAGCCTGGGTTACTTGCCAGGTTTGAATAGAGATCAGTTAGACCATGGAACGGGCTGATTTGTGCCTTCACAGCGCTCTGTCACATTGTGAATCAAAGGTGACTGCTTAGCTTCACTTTGAACAGTCCTTTCTGTCTAGGACCCTATGAGTTCTTTGATGGGAAAAACCAAGAATCCAGTCTTATAATGGGAGTTACTATAAAACTCACAGTTCAATTTGGATGAATACATGAAAATAATTGCTGTGCAGCTAATTAACTTGTAGAGCAACTTGTACTGCTGTCTGAATagtaaatggcaaaaaaaaatattttactattttatttgagAAAAACTGTTGTCATAAATTTAGGAAACAAACCCCATGAAGAGATCTTGGATGACCCACTGTAACTGCACAgtttaatacagtttttaaagtaataatgtaaaattaaattaatgacatcttttttttttttttttaaaccaaagttttcagaaaagcttgttaaaaaaaaaaaaaaaaaaaaa
>TCONS_00035762
GAGCTGTTCGCACGCAGACACGACACATTCACAGGAGAACCATTAAACAGAGAGGATGAGCGGTTGTCGTATTTTCATCGGTCGGTTAAACCCCTCTGCGCGGGAGAAGGACGTCGAGCGCTTCTTCAAGGGCTACGGGAGAATCAGAGACATCGACCTCAAACGAGGCTTCGGTTTTGTGGAATTTGATGATCCAAGAGATGCTGAAGATGCTGTTTATGAGCTTGATGGAAAAGAGCTCTGCAATGAGAGagtGACCATTGAACATGCACGCGTTCGTCTGCGTGGAGGCCGAGGTCGTGGGGGTGGAGGACGTTTCCCTGCTCGGTATGGTCGAGGCTCTCAGGACAGCCGAAGGAACCCTCCGCCAATGCGCACAGAGAATCGCCTCATCGTGGAGAATTTATCATCAAGAGTGAGCTGGCAGGtgagcattcatttattcatttcctcTCAAGTTATGGCGAGCCAGATGTATTCCCAAACACTGCATATATTAACAAAGACAATAAGGATTCCTTCATATGTATAAGTGCATCATGTAGAGTTACAATTTCTAGCTTCTTTTAATGTTAATCAATGGCATTCTGAGATTACTCTCAAAAATTGAAGGTCATATGTTAACTACTTCCATAAGTGCTAGAGATCAGGAAACACTAAGGTTAAAGTCAATTTGCCTTTGTTTTAACCAATTGTTCACCCCTCTATTTACCAGCCTGACTGTTGTGTCGTATGGAAGAGCTCGCTAATGGTGGAGTTAAGCCCTACAGGGTCCCTCTCTCTGCTTAATCCACTCCCATTGAGTCCCACGACTAGTAGACTTCCGCCGATCGCA
>TCONS_00035763
TTTATTGACTGACTCCATTTTGTGTGAGGAGCTGTTCGCACGCAGACACGACACATTCACAGGAGAACCATTAAACAGAGGTATGTTGCCTGAAATAAAATGTTCATCTGAGTTTAGAATTTAACGGGTGTGTTGTTAAATCAACTGTTTTGCTTTGTGATTCGTTATTTAACGAGCTCTGTTTGAATAACGTTATGGGTTGTGGTTCATAAAGGCCTCAAGCCTTCATTGATTCAGAAATGCGTCGGTGTTTGGCTCTTGCAGAATGTAAGTATCGTTATTTGATGACTGTTTTCATGCAATGGTCTTTGATTTAAAGAGGATGAGCGGTTGTCGTATTTTCATCGGTCGGTTAAACCCCTCTGCGCGGGAGAAGGACGTCGAGCGCTTCTTCAAGGGCTACGGGAGAATCAGAGACATCGACCTCAAACGAGGCTTCGGTTTTGTGGAATTTGATGATCCAAGAGATGCTGAAGATGCTGTTTATGAGCTTGATGGAAAAGAGCTCTGCAATGAGAGagtGACCATTGAACATGCACGCGTTCGTCTGCGTGGAGGCCGAGGTCGTGGGGGTGGAGGACGTTTCCCTGCTCGGTATGGTCGAGGCTCTCAGGACAGCCGAAGGAACCCTCCGCCAATGCGCACAGAGAATCGCCTCATCGTGGAGAATTTATCATCAAGAGTGAGCTGGCAGGtgagcattcatttattcatt

Function

symbol description
srsf5b Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to human SRSF5 (serine and arginine rich splicing factor 5).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-354 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be active in nuclear speck. Orthologous to human SRSF5 (serine and arginine rich splicing factor 5).

Ensembl:

ensembl_id ENSDARG00000027734

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035759 False 2640 mRNA 0.41 8 28869969 28884800
TCONS_00035760 False 559 processed_transcript 0.43 3 28871885 28875874
TCONS_00035761 False 1707 mRNA 0.45 6 28876736 28884829
TCONS_00035762 False 835 mRNA 0.47 5 28877867 28884800
TCONS_00035763 True 715 mRNA 0.46 4 28878254 28884828

Neighbor

gene id symbol gene type direction distance location
XLOC_018140 NA coding downstream 6087 28860442 ~ 28863882 (-)
XLOC_018139 max coding downstream 27365 28832762 ~ 28842604 (-)
XLOC_018138 rab15 coding downstream 68970 28782903 ~ 28800999 (-)
XLOC_018137 sipa1l1 coding downstream 101855 28650025 ~ 28768114 (-)
XLOC_018135 rgs6 coding downstream 227908 28511941 ~ 28642061 (-)
XLOC_018142 susd6 coding upstream 1161 28885990 ~ 28932038 (-)
XLOC_018143 acot21 coding upstream 61880 28946709 ~ 28956303 (-)
XLOC_018144 thbs1b coding upstream 151499 29036328 ~ 29052391 (-)
XLOC_018145 chrm5b coding upstream 343508 29228337 ~ 29229854 (-)
XLOC_018146 ryr3 coding upstream 383615 29268444 ~ 29420713 (-)
XLOC_017928 CU539064.1 misc downstream 18816268 10053405 ~ 10053701 (-)
XLOC_018136 BX569801.1 non-coding downstream 257647 28611272 ~ 28612322 (-)
XLOC_018130 NA non-coding downstream 636377 28233277 ~ 28233592 (-)
XLOC_018129 NA non-coding downstream 705817 28114764 ~ 28164152 (-)
XLOC_018118 BX248515.3 non-coding downstream 1815749 27054095 ~ 27054220 (-)
XLOC_018147 NA non-coding upstream 542109 29426938 ~ 29429462 (-)
XLOC_018151 BX248136.1 non-coding upstream 610471 29495300 ~ 29495435 (-)
XLOC_018156 NA non-coding upstream 802806 29687635 ~ 29691465 (-)
XLOC_018158 NA non-coding upstream 905113 29789942 ~ 29834538 (-)
XLOC_018160 NA non-coding upstream 1042356 29927185 ~ 29933758 (-)

Expression


Co-expression Network