XLOC_018142 (susd6)


Basic Information

Item Value
gene id XLOC_018142
gene name susd6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 28885990 ~ 28932038 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035764
CCGTCGTCCAAGCTACAGCTGATTTCTCATGAACCAGCAGACCTCTAGAAGCCCCGCCCCTCTCGCGTACAGTCCGCTGTGGTCGTCATGGGGACGGTATGAGAGCGAGGCCGCTGGTGGAGCTCGCAGCTCTTTCCTGCTGTTGAGAGGGAGGTGCTCGATCTGGCCCCGCTGCTCTCAACCTTCTCCGAGACGGATGATCAGAACAGAAAGGGCCGTCAGAATCTGTGAATATTTTACTTTACAACAGTCACCGCGTTTACAGTGACCCTGGGATTTCTAGTCGACGCAGCTCCATGGTGACCCGATACTGATTTTAAAGAGGAGGGCATTCACTGGTTCAGGACTCTTGCTGCACAAGCAGGACTGAAAGATGTGCAATGGAATGGTAGCGTGTGAGACGAGAGCCTCGCTCGCTCACGGGGTGGCCTCCACATCCCTGCTCCTCCTCCTCGCCATGCTCCCCACAGGCCAAGCTTCAGGTTGTCCCAGACCCACAGTTGTGCCTCATGGCCGTGGTAACCTGACGGAAATGAACCGTGGCTCCTTCTCTGTTGGCACGCTGCTCCAGTACAGTTGTGATCCAGGATACACGTTGGACGGCGTAAGCATGATCTCATGCACCGTCACTGGCCAATGGTCCTCTAACCCACCTCGCTGCATCAAAAATGATGTCTGCCAGCCACCAAGTGAGCCAGAAAACGGAGGGTACAACTGCCACCCGTCGCCATGCCACAGACTGACCCAGGGTACCGTGATTGAGTACTTTTGTGATGAGGGTTACATCCTGAAAGGAGGCTATCAGTTCCGAACCTGTGAAAGCGGAGAGTGGAATTCGCCCATGCAGATCAGCTGTCACCCTGTGCAAGGGGAGGAGCAGCACTCTTCATTGCCCATGCCAGCTCTCTCTATTGTGGCCTCTACTGCTAGTTCTGTTGCCCTCATCCTTCTGCTGGTGgtgctgtttgttttgcttcaGCCAAAACTCAAGTCCTTCCATCACAGCCGCCGGGAGCAGGGTGTGTCAGGACAGCACTCCTCCATGATGGTGGGGGGTGTTCAGGTGTCGCTGCCCTCCTATGAAGAGGCTGTGTACGGGGCGGGCGGCACTTCTGTACCTCCTCCAGAGTCGCGGGTGCAGATCGTGCTGTCGGAGGGCCCTCAAGCTGAGGCTTTGCATGAACCTCTGGAACAGGCTCAGGCGAGCTACAGTTTCCCTTCCACCTCCGCTGCTGCGAGCTCTTGTCACGCAGAGACTGTACTGGTTCACCAGGTGGCCTGTTCCTCCTctccctcctcctcttcctctcccTCCTGGGCTGTTGAGCAGCCTGGTGCCGCTGCGCCTCTCCACCGCCAGCAAAGCAGCGAGAGCAGCGACCAGCACAGCCTGCTTTCAGTCACCTCTGCTGAAGACTATGGCGATGATATTCCATTGCTAAAGGAAGCCTGAGTCTGTGTGCATTCGCCCCTCTCTCTGTCATCGCTGGCCAGGACTATAAAACCCTTAAAAGCTTCTCACCAAACACTCGCCCTTCCCACAGCCACCTGAAATGCGACCCGTCAGCTGTCCCTCAGCCAACAAAATTGCCCGCCTTGGGGGTCTGCAAGCTATGGGGTCCAACAGCTCTCTACACCGGACGACCCTTTAAAGGGATGCGCAAATGCTCAAGTTTAACACGTTGCACCTTTTCTTGCAGGTGTGCTCATAATCAGTTGCACTCACAGGCTTACCTCGTCACGGCGAGGATTCGCTAATTACAAACGAATGCATTCAGATTACGTGATGGACGTCCGCTCCGTCAATGACTGTGACCTCTTGCGAAAGAGAGAGTTCAGCAAGGATTTGCTAAGTCAGGCCCTTTTCTCTTTGATGCTGCATGTTCTGtgcaatttttttacattttcttttctgtttctACACGCGCGTACACACAGGAGCACGGCATCAAAGCATGACACACGGCACCATCTCCACGCTTTGACCTTGTGCGAGACGCAGGGTTAAACCCATTTGCATTGTACTGCATTCAAATACATGCTTGCCTTTTTTTATTTGTCCAGATGTACCTGTGCTGTGctctgcgtgtgtgtatgtgtgtttctgatGCCTGTGTGACTGTGGCTGTTGTGATTCGAAGAGGGCTGAAGCATCACCTAGGCTTTTTTTGTCCCCAAAATAGGAAACCTTTTTGGATACCTCCATCTTTTTAtaattgaaatgttatttaaGTAGAATGGATGTTCCTCGTCTACATGTCTGTTCGTCTAAAGTGAGGGAGATAAACTTCTGAGATCAAGGAGAAATAGTTTGATCTTATTTCTTAATTTGAAAGCAAGTATGTCTCCCTCATGTTTATGTGTTGCAcgcacaagtaaaaaaaaaagcaattttctttttttaatcacttttatgtTCATTTTCCAGAAGGACTTTGGTGGATTGCGGAGAAGGTCTATTGCTGAGCTGTACATTATGAGCTTTGACTAATaccatttgttttataatttaagGAAGTTTAATTCACTTTTAATTTGTGGAACTAAAATGAAACCACACATGTGGCGGATATTTTAAAGATCACTGTCAAGGATAGAAGCATCCTTcgcttttttagttttttagtgcCATCTGTTCTTGAGATGGTATTTGAAAAGAGAGTTAATCAGATATGCCATCAGAAATGGGTTGTACATTGTTTTAATGCACCGTGAATCAGATTTTGCACCAttttgcatcttttgaaaaagttGAGCCGATTGGAATGTCATCACTTAATTGAATGGGTGTTATTAGTGGTTATCAGctaatagatatgggccagttggGGCCTTCTGTGcttactggtaggctcagaagtcTCTTATGATTAATCAGCGATATATCATATGACTGTAATTAATGagaatcatttatattatttattaaatttcccattaattgtatttaattaacgtCTCCCCCATCCCTAAATCCTACCatcacagtaatttaaaaacagatCTAGATCTGGAGTCTTCACTACTATTATAACTGATAAACCACaagaattatttatgttattctTAAAATTTCCCATTAAAttgcagcacggtggcgcagtaggtagcacgatcgcttcacagcaagaaggtcgctggttcgagccccagctgggtcagttggcatttctgtgtggagtttgcatgttctctctgtgttcatgtgggtttcctccaggtgctctggattcccccacagtccaaagacatgcgctgtaggtgaattaaaatattctgtagtgtatgtgagtgtgtgcaagagtgtgtatgggtgtttcccagtgttgggttgcggctggacgggcatctgctgtgtaaaacatctgctggataagttggcggttcattccgctgtggcgatctctgattaataaagggactaagccgaaaagaaaatgaatgaatgtaatttcccattaattgtattttattatcgcctaccccaaccctaaacccaaccgtttcagtaatgtaaaaacagatcttgATGTGGAGTCTTCTCTATATTAGTATAGCGggttaaccatgtggatggataataacagccttctgagcctaccagtaggtgtaGAAGGACCCTACTGGCCcaaatctatcagctgataacgccTATTCAATTGAGTAAATCGGGTAAAAAGTTAGCTGTTGACTTGGAAAAATCTGGTGATTTAGGATTTATATTTGTGTTTGAGCAACAACGAATTCTACCAAATTAAAAATCCAAATGTCattttcagcatttgttttttttcagagaaGTAACCAGAAAATAATTTTTCAGACATATTTATATTAACGTCTCGACGTTTAAAGAGTTAAGAAGTCAATATTTGGTGCAATAAGCCTGGATTTTTAatcgaaacaaaaaaaaaaataatttgttgttCTGATTaactctcttttttaaaattactatttttttatttgaacttttaaGAAAATCAGTCCAGGATACTTAAACCCATAACTAATAAATCCAATTAATCCACAAAAACTGAGATTTTATAAGAAtttaaattatttctgttttaatttcaAAACAGCTGCAGAAAATGGCCTTGTTCTTCACTCGTGATGTTCTTTTGGCAAACGTACATTTGAAAAACCAATGAATCTTTTGTTTAAGATGCTTTTTCTTCGTGTTTTACATCCTTGTCCATTGGACTTTGCCACTTCGTATGTATATTCCCTTGTGTTTGGTGCGAGATTCTGATGTTTATCATCAtgcatcaaatatatatatattttgtgtgtctgactttggagagagagagagagagagagagagagagagagagagagagagagggcaaaTTTGCCTGTCTGCACATCCTCAGTTGAGTGTTCCTGGCTTGTTTctgtatattgatttttttttttttggttttgttcatgCAAACTGAAGGCAAGATATTACTGCTGCCTTAAAACTTGTACATTTCATACATTTCTCACTTTGTAATCATGTGTTTCTACCATCTCACTGGCTTTATGGTAATTTGTCTTCAGTTTCCTTATGGCCTTACTTTTTGTTTTCTATGCATAAACATTGTCTTGTTGATTTCCAGACGTAGGGTCTTACTCCTTTGGAGGATGTGACATAAGATTGTCTACACGTACTTCCTCAGATGCGTTTTTATTTTCCAGTGAACATGAAAgttgtttagtttaaaaaaaaaaggatgcaAGTTTAAAAAAGGATATCCAGGATGTGTGTGAAACACTGTTGTACGGTGTTTTTTCtgcaaatgtaatttaagttGACTCATCCACTCAGCTCCCCATCCCTCATTACACTTCTTTTGGTTTTCCTCTGTACATTGCTGTGGGTGtgaaaatagtattttaatatttgtataaagtttaatttaattctaCAGTGTGTATATAACTATTTCTAATTAAAGCTTTCATTTGAAGTGCA
>TCONS_00035765
TGCTGTTGAGAGGGAGGTGCTCGATCTGGCCCCGCTGCTCTCAACCTTCTCCGAGACGGATGATCAGAACAGAAAGGGCCGTCAGAATCTGTGAATATTTTACTTTACAACAGTCACCGCGTTTACAGTGACCCTGGGATTTCTAGTCGACGCAGCTCCATGGTGACCCGATACTGATTTTAAAGAGGAGGGCATTCACTGGTTCAGGACTCTTGCTGCACAAGCAGGACTGAAAGATGTGCAATGGAATGGTAGCGTGTGAGACGAGAGCCTCGCTCGCTCACGGGGTGGCCTCCACATCCCTGCTCCTCCTCCTCGCCATGCTCCCCACAGGCCAAGCTTCAGGTTGTCCCAGACCCACAGTTGTGCCTCATGGCCGTGGTAACCTGACGGAAATGAACCGTGGCTCCTTCTCTGTTGGCACGCTGCTCCAGTACAGTTGTGATCCAGGATACACGTTGGACGGCGTAAGCATGATCTCATGCACCGTCACTGGCCAATGGTCCTCTAACCCACCTCGCTGCATCAAAAATGATGGTATGTATGATGTCTGCCAGCCACCAAGTGAGCCAGAAAACGGAGGGTACAACTGCCACCCGTCGCCATGCCACAGACTGACCCAGGGTACCGTGATTGAGTACTTTTGTGATGAGGGTTACATCCTGAAAGGAGGCTATCAGTTCCGAACCTGTGAAAGCGGAGAGTGGAATTCGCCCATGCAGATCAGCTGTCACCCTGTGCAAGGGGAGGAGCAGCACTCTTCATTGCCCATGCCAGCTCTCTCTATTGTGGCCTCTACTGCTAGTTCTGTTGCCCTCATCCTTCTGCTGGTGgtgctgtttgttttgcttcaGCCAAAACTCAAGTCCTTCCATCACAGCCGCAGCCGGGAGCAGGGTGTGTCAGGACAGCACTCCTCCATGATGGTGGGGGGTGTTCAGGTGTCGCTGCCCTCCTATGAAGAGGCTGTGTACGGGGCGGGCGGCACTTCTGTACCTCCTCCAGAGTCGCGGGTGCAGATCGTGCTGTCGGAGGGCCCTCAAGCTGAGGCTTTGCATGAACCTCTGGAACAGGCTCAGGCGAGCTACAGTTTCCCTTCCACCTCCGCTGCTGCGAGCTCTTGTCACGCAGAGACTGTACTGGTTCACCAGGTGGCCTGTTCCTCCTctccctcctcctcttcctctcccTCCTGGGCTGTTGAGCAGCCTGGTGCCGCTGCGCCTCTCCACCGCCAGCAAAGCAGCGAGAGCAGCGACCAGCACAGCCTGCTTTCAGTCACCTCTGCTGAAGACTATGGCGATGATATTCCATTGCTAAAGGAAGCCTGAGTCTGTGTGCATTCGCCCCTCTCTCTGTCATCGCTGGCCAGGACTATAAAACCCTTAAAAGCTTCTCACCAAACACTCGCCCTTCCCACAGCCACCTGAAATGCGACCCGTCAGCTGTCCCTCAGCCAACAAAATTGCCCGCCTTGGGGGTCTGCAAGCTATGGGGTCCAACAGCTCTCTACACCGGACGACCCTTTAAAGGGATGCGCAAATGCTCAAGTTTAACACGTTGCACCTTTTCTTGCAGGTGTGCTCATAATCAGTTGCACTCACAGGCTTACCTCGTCACGGCGAGGATTCGCTAATTACAAACGAATGCATTCAGATTACGTGATGGACGTCCGCTCCGTCAATGACTGTGACCTCTTGCGAAAGAGAGAGTTCAGCAAGGATTTGCTAAGTCAGGCCCTTTTCTCTTTGATGCTGCATGTTCTGtgcaatttttttacattttcttttctgtttctACACGCGCGTACACACAGGAGCACGGCATCAAAGCATGACACACGGCACCATCTCCACGCTTTGACCTTGTGCGAGACGCAGGGTTAAACCCATTTGCATTGTACTGCATTCAAATACATGCTTGCCTTTTTTTATTTGTCCAGATGTACCTGTGCTGTGctctgcgtgtgtgtatgtgtgtttctgatGCCTGTGTGACTGTGGCTGTTGTGATTCGAAGAGGGCTGAAGCATCACCTAGGCTTTTTTTGTCCCCAAAATAGGAAACCTTTTTGGATACCTC

Function

symbol description
susd6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SUSD6 (sushi domain containing 6).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-8832 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SUSD6 (sushi domain containing 6).

Ensembl:

ensembl_id ENSDARG00000030116

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035764 False 4966 mRNA 0.44 7 28885990 28932038
TCONS_00035765 True 2081 mRNA 0.53 7 28888753 28931901

Neighbor

gene id symbol gene type direction distance location
XLOC_018141 srsf5b coding downstream 1161 28869969 ~ 28884829 (-)
XLOC_018140 NA coding downstream 22108 28860442 ~ 28863882 (-)
XLOC_018139 max coding downstream 43386 28832762 ~ 28842604 (-)
XLOC_018138 rab15 coding downstream 84991 28782903 ~ 28800999 (-)
XLOC_018137 sipa1l1 coding downstream 117876 28650025 ~ 28768114 (-)
XLOC_018143 acot21 coding upstream 14671 28946709 ~ 28956303 (-)
XLOC_018144 thbs1b coding upstream 104290 29036328 ~ 29052391 (-)
XLOC_018145 chrm5b coding upstream 296299 29228337 ~ 29229854 (-)
XLOC_018146 ryr3 coding upstream 336406 29268444 ~ 29420713 (-)
XLOC_018147 NA coding upstream 494900 29426938 ~ 29429462 (-)
XLOC_017928 CU539064.1 misc downstream 18832289 10053405 ~ 10053701 (-)
XLOC_018136 BX569801.1 non-coding downstream 273668 28611272 ~ 28612322 (-)
XLOC_018130 NA non-coding downstream 652398 28233277 ~ 28233592 (-)
XLOC_018129 NA non-coding downstream 721838 28114764 ~ 28164152 (-)
XLOC_018118 BX248515.3 non-coding downstream 1831770 27054095 ~ 27054220 (-)
XLOC_018151 BX248136.1 non-coding upstream 563262 29495300 ~ 29495435 (-)
XLOC_018156 NA non-coding upstream 755597 29687635 ~ 29691465 (-)
XLOC_018158 NA non-coding upstream 857904 29789942 ~ 29834538 (-)
XLOC_018160 NA non-coding upstream 995147 29927185 ~ 29933758 (-)

Expression


Co-expression Network