XLOC_018149 (actc1a)


Basic Information

Item Value
gene id XLOC_018149
gene name actc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29476852 ~ 29483514 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035779
AACCATCCTAAAAAACAGCAATCATGTGTGACGATGATGAGACTACCGCACTCGTGTGCGACAATGGTTCTGGTTTGGTCAAGGCTGGATTCGCCGGTGATGATGCTCCACGTGCTGTCTTTCCCTCTATTGTTGGCAGACCCCGTCACCAGGGTGTGATGGTTGGTATGGGTCAGAAAGACAGCTATGTGGGAGACGAGGCTCAGAGCAAGAGGGGTATCCTCACTCTTAAATACCCCATCGAGCACGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAGGAGCATCCAACTCTGCTCACTGAGGCCCCCCTTAACCCTAAAGCCAACAGAGAGAAGATGACACAGATCATGTTTGAGACCTTCAACGTTCCCGCCATGTATGTTGCCATTCAGGCTGTGCTCTCCCTCTACGCCTCTGGCCGTACCACTGGTATTGTACTGGACTCTGGTGATGGTGTGACCCACAACGTGCCCATCTATGAGGGTTATGCTCTTCCTCATGCCATCATGCGTCTGGATCTGGCCGGTCGTGACTTGACTGACTACCTGATGAAGATCCTGACTGAGCGTGGCTACTCTTTCGTCACCACTGCCGAGCGTGAGATTGTGCGTGATATTAAGGAGAAGCTGTGCTACGTGGCTCTGGACTTTGAGAATGAGATGGCCACTGCTGCCTCCTCCTCCTCTCTGGAGAAGAGCTACGAGTTGCCTGATGGTCAGGTCATCACCATTGGAAATGAGCGTTTCCGCTGTCCTGAGACCCTCTTCCAGCCCTCTTTCATTGGTATGGAGTCCGCTGGCATCCATGAAACTGCCTACAACAGCATTATGAAGTGCGACATTGATATCCGCAAGGATCTGTATGCCAACAACGTCCTTTCTGGTGGTACCACCATGTATCCAGGTATCGCTGACCGCATGCAGAAGGAAATCACTGCTCTGGCCCCCAGCACAATGAAGATCAAGATCATTGCTCCCCCTGAACGCAAGTACTCCGTCTGGATTGGTGGCTCCATCCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTATGATGAGGCAGGTCCCTCCATCGTCCACAGAAAGTGCTTCTAAATCTTCAATCCTTCTCTGTTCAGTCCAACTAACCCCCCGTATGCCTTTGTACTGTGCCTTGTGCTGTATATACATGTACCGTTGTAATAAAAGTTCTGATGTGTCCATACATATTGTGTTTGATAAAGTGAATCTATAAGGTGAACTAACGACTATAGCCACTTCCATGTCATGAGGGGTGTATTTGGTCTGCAACACAATTTATAAGCATCACACCCCCCTCTACTGGCTTTTCACCGTCACACTGTGTCCTAGTGCCACATAAACGTTATATAAAAGTAACAAGACTCATAAAAGTCAATGAACCAGGCAACCTTACTGCTCTAAAGTTCAGTTCGGGCTCTTATTTTTCCACTATAGGCGCTTTCAGTAGTGGACAAGGATCATCATAGCCACTCTTA
>TCONS_00035780
CCTTCATCCCAGCGGAAACTCCAGTCTTGCGCTACAACTTTGAACCATCCTAAAAAACAGCAATCATGTGTGACGATGATGAGACTACCGCACTCGTGTGCGACAATGGTTCTGGTTTGGTCAAGGCTGGATTCGCCGGTGATGATGCTCCACGTGCTGTCTTTCCCTCTATTGTTGGCAGACCCCGTCACCAGGGTGTGATGGTTGGTATGGGTCAGAAAGACAGCTATGTGGGAGACGAGGCTCAGAGCAAGAGGGGTATCCTCACTCTTAAATACCCCATCGAGCACGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAGGAGCATCCAACTCTGCTCACTGAGGCCCCCCTTAACCCTAAAGCCAACAGAGAGAAGATGACACAGATCATGTTTGAGACCTTCAACGTTCCCGCCATGTATGTTGCCATTCAGGCTGTGCTCTCCCTCTACGCCTCTGGCCGTACCACTGGTATTGTACTGGACTCTGGTGATGGTGTGACCCACAACGTGCCCATCTATGAGGGTTATGCTCTTCCTCATGCCATCATGCGTCTGGATCTGGCCGGTCGTGACTTGACTGACTACCTGATGAAGATCCTGACTGAGCGTGGCTACTCTTTCGTCACCACTGCCGAGCGTGAGATTGTGCGTGATATTAAGGAGAAGCTGTGCTACGTGGCTCTGGACTTTGAGAATGAGATGGCCACTGCTGCCTCCTCCTCCTCTCTGGAGAAGAGCTACGAGTTGCCTGATGGTCAGGTCATCACCATTGGAAATGAGCGTTTCCGCTGTCCTGAGACCCTCTTCCAGCCCTCTTTCATTGGTATGGAGTCCGCTGGCATCCATGAAACTGCCTACAACAGCATTATGAAGTGCGACATTGATATCCGCAAGGATCTGTATGCCAACAACGTCCTTTCTGGTGGTACCACCATGTATCCAGGTATCGCTGACCGCATGCAGAAGGAAATCACTGCTCTGGCCCCCAGCACAATGAAGATCAAGATCATTGCTCCCCCTGAACGCAAGTACTCCGTCTGGATTGGTGGCTCCATCCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAACAGGAGTATGATGAGGCAGGTCCCTCCATCGTCCACAGAAAGTGCTTCTAAATCTTCAATCCTTCTCTGTTCAGTCCAACTAACCCCCCGTATGCCTTTGTACTGTGCCTTGTGCTGTATATACATGTACCGTTGTAATAAAAGTTCTGATGTGTCCATA

Function

symbol description
actc1a Acts upstream of or within atrioventricular canal development and endocardial cushion formation. Predicted to be part of dynactin complex. Is expressed in adaxial cell; brain; muscle; pericardial region; and trunk. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1).

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0003203 endocardial cushion morphogenesis biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005869 dynactin complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040520-4 Acts upstream of or within atrioventricular canal development and endocardial cushion formation. Predicted to be part of dynactin complex. Is expressed in adaxial cell; brain; muscle; pericardial region; and trunk. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1).

Ensembl:

ensembl_id ENSDARG00000042535

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035779 False 1558 mRNA 0.49 8 29476852 29482492
TCONS_00035780 True 1308 mRNA 0.52 9 29477144 29483514

Neighbor

gene id symbol gene type direction distance location
XLOC_018148 grem1a coding downstream 1680 29469753 ~ 29475172 (-)
XLOC_018147 NA coding downstream 47390 29426938 ~ 29429462 (-)
XLOC_018146 ryr3 coding downstream 56139 29268444 ~ 29420713 (-)
XLOC_018145 chrm5b coding downstream 246998 29228337 ~ 29229854 (-)
XLOC_018144 thbs1b coding downstream 424461 29036328 ~ 29052391 (-)
XLOC_018150 rrm2 coding upstream 8955 29492469 ~ 29499426 (-)
XLOC_018151 BX248136.1 coding upstream 11786 29495300 ~ 29495435 (-)
XLOC_018152 klf11a coding upstream 18551 29502065 ~ 29505863 (-)
XLOC_018153 taf1b coding upstream 29956 29513470 ~ 29533010 (-)
XLOC_018154 cpsf3 coding upstream 136306 29619820 ~ 29633507 (-)
XLOC_017928 CU539064.1 misc downstream 19423151 10053405 ~ 10053701 (-)
XLOC_018140 NA non-coding downstream 612970 28860442 ~ 28863882 (-)
XLOC_018136 BX569801.1 non-coding downstream 864530 28611272 ~ 28612322 (-)
XLOC_018130 NA non-coding downstream 1243260 28233277 ~ 28233592 (-)
XLOC_018129 NA non-coding downstream 1312700 28114764 ~ 28164152 (-)
XLOC_018156 NA non-coding upstream 204121 29687635 ~ 29691465 (-)
XLOC_018158 NA non-coding upstream 306428 29789942 ~ 29834538 (-)
XLOC_018160 NA non-coding upstream 443671 29927185 ~ 29933758 (-)
XLOC_018162 NA non-coding upstream 608745 30092259 ~ 30099019 (-)

Expression


Co-expression Network