XLOC_018153 (taf1b)


Basic Information

Item Value
gene id XLOC_018153
gene name taf1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29513470 ~ 29533010 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035791
aaaacgtATAGTCGGCCATGTTGAAAGCGAGTATGCTCACGctgaaaacagaaaacaaaaattgTCTCATGTTTTGAAGTTCAGCTTACGTTTACACCATGGACGAACAAATTACTGGTGGATATAGTGAGCCATGCGGACAGTGCGCTGCTGTGGACTGGGGAGTGTCAGACGAGGGTCAGTTCTTCTGTAAGAGCTGCCACAATGTCATCGAGAAAATAAGGGAGGTAGAGGATGTTACCAGCCTTCATCATAAGCATGGCAGGATCTCAATAGTCAGGAAACCCAAGAAGAAAAAACATGATTCTGAAAGGGAGTGGTTGGTCTGTGAGGGATTTCAGTTCATCCTCAAACACCAGGCCAAGGCTTTGGTCAGTCTAGGTGTTTGTATGAAGTTTGAGACAGAAGTTCTGTGGAATTTCTGGAAGAGGTACCTGCAGAACACAAGGCAAGCTTTTACTGAAAATCCAGTGTCCACTGCGAGGTTTGAAGTGTTTATGAAGTCCCAGAGTGGCTCAGAGTCTGACACCCAGAGCCACCAGTCATGCTACAGTGAGGCTTCTTCAGACACAGAGATGTCTGTCTCAGGTATATCTGTTGATGGAAGATCCGCTGTAAGTTCGGAGTCCCTACATTCTATACCCCAAAAAGGGAGGAGAGGAAGAGTTTCCAATCTTATGTCCATGCCACGCACACTGGCCATGTGCTATTTGGCTCTGCTGTGGGTTCGAGAGGCCATCACTCTGACTGACCTGCTAAGGATGGTCGCAGAAGGCCATATTCCTTACTTGCACCTTCACGAAACATTTCCAGCAGAGATGAGAATGTTCGGGAAAGATGTCCAAATCTTTCGGGTTCTGTTCTTTCCATCTTATGCGTTCATCAAAAAAGAAGCTTTAGTTCTGGCAAAGATCATGAAGTTGCCGTCCTTCCCAACAATTTCTCAGGATTGTCTTTTCCACCCAGTTCCACTCACTGTCCGCTATCTGCTAGAGGCAAACCTTCCagATGCTCTTCATGTTTGGGTCCAGAAGGTTATAACTGGAGCTGGTATGGATAGCGATTCCTTTCTGACGTTTGACCCCACTGATAAGAAGCCTCATCTCTTGAGTTATGATGTTCAAGCAGTAGCTGTCATTATTGTGGCCATGAAGCTCCTTTTCAAGTTGGATGATCATGTGGAATGTTTAGAAAGATGGTTTAACATCGTACAGCCTGTTTTAGAGCAAGCCAGACTCAAGGAGGAACAAGAAGAAGCTCGACGGCAGTGGAATTTTGCTAACCCTTTCATCACAAATCTGAAGCGCAAGTCCCTAGTTCTCAAAAAGAGACGTGTGACTGATCATTTGCAGCAGAGATTTCAGAAGTTTGCAGATCCTGCACCAGAACAGTCCACGTCCACGACAAACTCTCACACCAGCTTCCGCTTCAGCTGGGGAGAGGAGGAGGGTTCAGATGGACCCAGTATGTTTAACCAGAATTTGGACTGTACTGTTAAGGCAAAAGCGGTCAATGGCCTGGCCAACCAAAGATACTGGCATCCTGAACTGAGGATATGCCCGGAGAAtaaatgtgttAGTCATTTCTCAAAATTTGAGCCCAGTTTACCTCGGATGTTCGTGTGGGTGCTTGATCTCTTCTCGTTCATTCTGGGTGTCCTTCAGTCTGACGTGTACGAAGAGGTCCTCAACGTTGAGCGACGCTTCTTAAAGAAAAATTATCGGCTCGACAGTCGATTGACTTCTTCtcatctgaaaaagaaaaaaggtccAATTTTGTAACTCATGCTGGTGGAGAGAATATCACAAACACAGACTGAATTCAGCATACCAGCTTCCCAGAttccttttcttctcctctcaACAGCAGGAAGACTGGTCAGACTTTCATAGTGATGCCTTGTCATTTTCAGTAGTgtcttgcagagtttagttctGTGAGTTTGGGAATTAACAGTATCTGTTGCCTTATAAAAAAAGACAGGTTTGCCTTGTATGCATGGTGTTGTTTTGATTAAAGAAATGCAACACTTACATTGGTTGTAGCTCCACAAATGAACCAACAGGGGGAGTAATGAACCTTACAATTGAGTGCTGATGGATTCTTTTGTCCTGCAATTCTCAAACATTTTGTCTAATGTTTGAGCAAAATGCGTAGCAAAACTAATTCTGCTGAAAGGCTGAAGTAGTTTTGTATATGAGCAgtctttttactttatttactctTTTAACTATATCCTATTGTGATTTATTTTCTGCGGCATTTGCTTTAATAGATCAGAGTGAACGGATGTAAGTGGTTTAACTCCCGTTAGTCTAACAAATGTGTCTTGTAGGAGAATGTAGCCTATATTTAGTCGTACTGTGACTTGCACGTAACTGCTTTGTACTTTAATTCCACTTTTCTGCCACATTGTCATCAGCATAACACATTTGAGCCCATAGTATAGTTGTTTTTTACATGTATATCAGCATAAAGACAGTTGAACACTGTCTTCCAAACTAAAGTGCACTCCATTTGATAGTGTGTGCAAATACTGGTGCTCAAAGCGATCACGTTTACTTTCTTTGCAAAGATTTGAATGACGTGTTTGtatgaacttttttttaaaaatgtgtaaagatAGAAGTATACTTTAGGCATTGAGTAGTCCTTTAACCCTGAGTCTAAATGACTACTTCTTGCTAAATGCTTCAAATATATAGCAgtttatatatagtaatatatattttttcttgctGTTTTGCATATTTGATCAGTTAAGAAATGTATTGACTTAATCTTGAGGTAAAGTTTCTGAAA
>TCONS_00035792
TTTTGAAGTTCAGCTTACGTTTACACCATGGACGAACAAATTACTGGTGGATATAGTGAGCCATGCGGACAGTGCGCTGCTGTGGACTGGGGAGTGTCAGACGAGGGTCAGTTCTTCTGTAAGAGCTGCCACAATGTCATCGAGAAAATAAGGGAGGTAGAGGATGTTACCAGCCTTCATCATAAGCATGGCAGGATCTCAATAGTCAGGAAACCCAAGAAGAAAAAACATGATTCTGAAAGGGAGTGGTTGGTCTGTGAGGGATTTCAGTTCATCCTCAAACACCAGGCCAAGGCTTTGGTCAGTCTAGGTGTTTGTATGAAGTTTGAGACAGAAGTTCTGTGGAATTTCTGGAAGAGGTACCTGCAGAACACAAGGCAAGCTTTTACTGAAAATCCAGTGTCCACTGCGAGGTTTGAAGTGTTTATGAAGTCCCAGAGTGGCTCAGAGTCTGACACCCAGAGCCACCAGTCATGCTACAGTGAGGCTTCTTCAGACACAGAGATGTCTGTCTCAGGTATATCTGTTGATGGAAGATCCGCTGTAAGTTCGGAGTCCCTACATTCTATACCCCAAAAAGGGAGGAGAGGAAGAGTTTCCAATCTTATGTCCATGCCACGCACACTGGCCATGTGCTATTTGGCTCTGCTGTGGGTTCGAGAGGCCATCACTCTGACTGACCTGCTAAGGATGGTCGCAGAAGGCCATATTCCTTACTTGCACCTTCACGAAACATTTCCAGCAGAGATGAGAATGTTCGGGAAAGATGTCCAAATCTTTCGGGTTCTGTTCTTTCCATCTTATGCGTTCATCAAAAAAGAAGCTTTAGTTCTGGCAAAGATCATGAAGTTGCCGTCCTTCCCAACAATTTCTCAGGATTGTCTTTTCCACCCAGTTCCACTCACTGTCCGCTATCTGCTAGAGGCAAACCTTCCagATGCTCTTCATGTTTGGGTCCAGAAGGTTATAACTGGAGCTGGTATGGATAGCGATTCCTTTCTGACGTTTGACCCCACTGATAAGAAGCCTCATCTCTTGAGTTATGATGTTCAAGCAGTAGCTGTCATTATTGTGGCCATGAAGCTCCTTTTCAAGTTGGATGATCATGTGGAATGGAAATTATCTCATGATGCAGccaagaagaagaataataaagTCTTCAGTTTAGAAAGATGGTTTAACATCGTACAGCCTGTTTTAGAGCAAGCCAGACTCAAGGAGGAACAAGAAGAAGCTCGACGGCAGTGGAATTTTGCTAACCCTTTCATCACAAATCTGAAGCGCAAGTCCCTAGTTCTCAAAAAGAGACGTGTGACTGATCATTTGCAGCAGAGATTTCAGAAGTTTGCAGATCCTGCACCAGAACAGTCCACGTCCACGACAAACTCTCACACCAGCTTCCGCTTCAGCTGGGGAGAGGAGGAGGGTTCAGATGGACCCAGTATGTTTAACCAGAATTTGGACTGTACTGTTAAGGCAAAAGCGGTCAATGGCCTGGCCAACCAAAGATACTGGCATCCTGAACTGAGGATATGCCCGGAGAAtaaatgtgttAGTCATTTCTCAAAATTTGAGCCCAGTTTACCTCGGATGTTCGTGTGGGTGCTTGATCTCTTCTCGTTCATTCTGGGTGTCCTTCAGTCTGACGTGTACGAAGAGGTCCTCAACGTTGAGCGACGCTTCTTAAAGAAAAATTATCGGCTCGACAGTCGATTGACTTCTTCtcatctgaaaaagaaaaaaggtccAATTTTGTAACTCATGCTGGTGGAGAGAATATCACAAACACAGACTGAATTCAGCATACCAGCTTCCCAGAttccttttcttctcctctcaACAGCAGGAAGACTGGTCAGACTTTCATAGTGATGCCTTGTCATTTTCAGTAGTgtcttgcagagtttagttctGTGAGTTTGGGAATTAACAGTATCTGTTGCCTTATAAAAAAAGACAGGTTTGCCTTGTATGCATGGTGTTGTTTTGATTAAAGAAATGCAACACTTACATTGGTTGTAGCTCCACAAATGAACCAACAGGGGGAGTAATGAACCTTACAATTGAGTGCTGATGGATTCTTTTGTCCTGCAATTCTCAAACATTTTGTCTAATGTTTGAGCAAAATGCGTAGCAAAACTAATTCTGCTGAAAGGCTGAAGTAGTTTTGTATATGAGCAgtctttttactttatttactctTTTAACTATATCCTATTGTGATTTATTTTCTGCGGCATTTGCTTTAATAGATCAGAGTGAACGGATGTAAGTGGTTTAACTCCCGTTAGTCTAACAAATGTGTCTTGTAGGAGAATGTAGCCTATATTTAGTCGTACTGTGACTTGCACGTAACTGCTTTGTACTTTAATTCCACTTTTCTGCCACATTGTCATCAGCATAACACATTTGAGCCCATAGTATAGTTGTTTTTTACATGTATATCAGCATAAAGACAGTTGAACACTGTCTTCCAAACTAAAGTGCACTCCATTTGATAGTGTGTGCAAATACTGGTGCTCAAAGCGATCACGTTTACTTTCTTTGCAAAGATTTGAATGACGTGTTTGtatgaacttttttttaaaaatgtgtaaagatAGAAGTATACTTTAGGCATTGAGTAGTCCTTTAACCCTGAGTCTAAATGACTACTTCTTGCTAAATGCTTCAAATATATAGCAgtttatatatagtaatatatattttttcttgctGTTTTGCATATTTGATCAGTTAAGAAATGTATTGACTTAATCTTGAGGTAAAGTTTCT
>TCONS_00035793
gaataattaatgataaaaatgtgaTTTGAAGATTTAAAAAGAGGGTGGAGGGATTAATTTGATTACACACATCACTGAGCTGAAATGTTTGTGACTTTGTTTTCcaatagaatgtaaaataaagaacGTCAAAACACAAAATTTAATGAGTGCGGATCACTGGCTACTTCTTAGTTTACTGAATCACTTTATGGATGACAAAAAAAAGAATCTCCTAATTAAGGTTGGGAATTGGAGATTCATTTAGATTCTAGTATTGGATACTTGGATTAGAAATCGGATACTTGTTATAAAgtcaaacatttaatttaatgagTGCGGGTCACTGGCTACTTCTTAGATAACTGAATCAAAAGAGTAGCTACATTTGGTAAAGAATGTCGGCAAAgttaaatgtcattattattgtaaaatcaAAGTCGATATGCATAATTGGAATAGGAATTGATCAAGTTCAAATCTTAGCCAACCCTACTCCTAATGCAATGCaatgtcatgttttgttttgacagACAGAAGTTCTGTGGAATTTCTGGAAGAGGTACCTGCAGAACACAAGGCAAGCTTTTACTGAAAATCCAGTGTCCACTGCGAGGTTTGAAGTGTTTATGAAGTCCCAGAGTGGCTCAGAGTCTGACACCCAGAGCCACCAGTCATGCTACAGTGAGGCTTCTTCAGACACAGAGATGTCTGTCTCAGGTATATCTGTTGATGGAAGATCCGCT

Function

symbol description
taf1b Predicted to enable RNA polymerase I core promoter sequence-specific DNA binding activity. Predicted to be involved in RNA polymerase I preinitiation complex assembly and nucleolar large rRNA transcription by RNA polymerase I. Predicted to act upstream of or within transcription by RNA polymerase I. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I core factor complex and RNA polymerase transcription factor SL1 complex. Orthologous to human TAF1B (TATA-box binding protein associated factor, RNA polymerase I subunit B).

GO:

id name namespace
GO:0001188 RNA polymerase I preinitiation complex assembly biological_process
GO:0006360 transcription by RNA polymerase I biological_process
GO:0042790 nucleolar large rRNA transcription by RNA polymerase I biological_process
GO:0070860 RNA polymerase I core factor complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005668 RNA polymerase transcription factor SL1 complex cellular_component
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-041008-2 Predicted to enable RNA polymerase I core promoter sequence-specific DNA binding activity. Predicted to be involved in RNA polymerase I preinitiation complex assembly and nucleolar large rRNA transcription by RNA polymerase I. Predicted to act upstream of or within transcription by RNA polymerase I. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I core factor complex and RNA polymerase transcription factor SL1 complex. Orthologous to human TAF1B (TATA-box binding protein associated factor, RNA polymerase I subunit B).

Ensembl:

ensembl_id ENSDARG00000028937

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035791 False 2802 mRNA 0.42 14 29513470 29533010
TCONS_00035792 False 2775 mRNA 0.42 15 29513474 29532939
TCONS_00035793 True 725 lncRNA 0.36 3 29527191 29529831

Neighbor

gene id symbol gene type direction distance location
XLOC_018152 klf11a coding downstream 7607 29502065 ~ 29505863 (-)
XLOC_018150 rrm2 coding downstream 14044 29492469 ~ 29499426 (-)
XLOC_018151 BX248136.1 coding downstream 18035 29495300 ~ 29495435 (-)
XLOC_018149 actc1a coding downstream 29956 29476852 ~ 29483514 (-)
XLOC_018148 grem1a coding downstream 38298 29469753 ~ 29475172 (-)
XLOC_018154 cpsf3 coding upstream 86810 29619820 ~ 29633507 (-)
XLOC_018155 si:ch211-195d17.2 coding upstream 143864 29676874 ~ 29683783 (-)
XLOC_018156 NA coding upstream 154625 29687635 ~ 29691465 (-)
XLOC_018157 id2b coding upstream 251917 29784927 ~ 29787210 (-)
XLOC_018158 NA coding upstream 256932 29789942 ~ 29834538 (-)
XLOC_017928 CU539064.1 misc downstream 19459769 10053405 ~ 10053701 (-)
XLOC_018147 NA non-coding downstream 84008 29426938 ~ 29429462 (-)
XLOC_018140 NA non-coding downstream 649588 28860442 ~ 28863882 (-)
XLOC_018136 BX569801.1 non-coding downstream 901148 28611272 ~ 28612322 (-)
XLOC_018130 NA non-coding downstream 1279878 28233277 ~ 28233592 (-)
XLOC_018160 NA non-coding upstream 394175 29927185 ~ 29933758 (-)
XLOC_018162 NA non-coding upstream 559249 30092259 ~ 30099019 (-)
XLOC_018163 NA non-coding upstream 590480 30123490 ~ 30258573 (-)

Expression


Co-expression Network