XLOC_018156


Basic Information

Item Value
gene id XLOC_018156
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 29687635 ~ 29691465 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036855
CAAGCCTGAAGGCTCTCAGAAGACATCTTCATTACTGAATAGAAGAGTTATGAGAGATCTTCAGCCTGCTGATCATCTCAGAAGAATGAGAGTAAGGAATGACATTTGTCATCTCCAGAACCCTCCTCTCCGGCAGCCTAAAACAAGCCCATTACAGTCCTGCAGCTGCAGAACAAACGACATTTGTCATCTCCAGAACCCTCCTCTCCTGCAGCCTATGACAAGCCCATTACAGTCCTACAGCCGCGGGACACGGGTGAACAACAATGGAGATTTTGCAAGGCACTGATGAAGAACCTGAT
>TCONS_00035800
CACGCAGACGTCATGAATTTCGGAAGGAAACGTTAAAAATGCAACGTTTTCTTTGTCCTTACCAAATTGTTTGGTGCACAGGGCTTGTAGAAAGGACCTGGGTGCCAACGAAAGCTGTGATGAGGGTTTTGTGCCCTCAGCATTCATCTCACAAACACAGACATAAGAGAAATGTACCTGGTCTAACGGAAGTGGCAGAGCCCAGTTCGCCCTGATTCAATCCCACACATCCACATCCACCTCTGGAGAGACTGTTGCTGCTTGCTGCTGTCCACTGCTGGTAAAAAACGGCAGTACAACACCCTACAGTCCGCCAAGACCAATTTGCAAATCCTACTACTGTGAAGGCttggctcatgaatattaatcagGTACCGTGACGTTCGGAGAGCTGATTGGGTGAAAAGCAGACGTTGAATAAAGCATGTGTAAACCAGTTTCCTCTTCAGAATGAGCAGCATGTAAAGATTGTAGCCAGTGACAGACAAAATCTTATCGCTGAGCCGCAGCCTGAAGAGTAGCAATAGGACAAGCCTGAAGGCTCTCAGAAGACATCTTCATTACTGAATAGAAGAGTTATGAGAGATCTTCAGCCTGCTGATCATCTCAGAAGAATGAGAGTAAGGAATGACATTTGTCATCTCCAGAACCCTCCTCTCCGGCAGCCTAAAACAAGCCCATTACAGTCCTGCAGCTGCAGAACAAACCCTCCTCTCCTGCAGCCTATGACAAGCCCATTACAGTCCTACAGCCGCGGGACACGGGTGAACAACAATGGAGATTTTGCAAGGCACTGATGAAGAACCTGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036855 False 302 lncRNA 0.48 3 29687635 29689408
TCONS_00035800 True 810 lncRNA 0.47 5 29687635 29691465

Neighbor

gene id symbol gene type direction distance location
XLOC_018155 si:ch211-195d17.2 coding downstream 3852 29676874 ~ 29683783 (-)
XLOC_018154 cpsf3 coding downstream 54128 29619820 ~ 29633507 (-)
XLOC_018153 taf1b coding downstream 154625 29513470 ~ 29533010 (-)
XLOC_018152 klf11a coding downstream 181772 29502065 ~ 29505863 (-)
XLOC_018150 rrm2 coding downstream 188209 29492469 ~ 29499426 (-)
XLOC_018157 id2b coding upstream 93462 29784927 ~ 29787210 (-)
XLOC_018158 NA coding upstream 98477 29789942 ~ 29834538 (-)
XLOC_018159 rnf144ab coding upstream 144811 29836276 ~ 29864530 (-)
XLOC_018160 NA coding upstream 235720 29927185 ~ 29933758 (-)
XLOC_018161 sox11b coding upstream 341163 30032628 ~ 30035326 (-)
XLOC_017928 CU539064.1 misc downstream 19633934 10053405 ~ 10053701 (-)
XLOC_018151 BX248136.1 non-coding downstream 192200 29495300 ~ 29495435 (-)
XLOC_018147 NA non-coding downstream 258173 29426938 ~ 29429462 (-)
XLOC_018140 NA non-coding downstream 823753 28860442 ~ 28863882 (-)
XLOC_018136 BX569801.1 non-coding downstream 1075313 28611272 ~ 28612322 (-)
XLOC_018130 NA non-coding downstream 1454043 28233277 ~ 28233592 (-)
XLOC_018162 NA non-coding upstream 400794 30092259 ~ 30099019 (-)
XLOC_018163 NA non-coding upstream 432025 30123490 ~ 30258573 (-)
XLOC_018166 BX276180.4 non-coding upstream 681198 30372663 ~ 30372883 (-)

Expression


Co-expression Network