XLOC_018162



Basic Information


Item Value
gene id XLOC_018162
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30092259 ~ 30099019 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00036480
GAGAGATCCAGGTGTTGACAGGCATGATATGAGCTCAGAGGAAGTGCTGACGGATCTTGAGCTGGTCAGACATGAGGGCTTTCAGGATGAGGGTGACGGCAACTGAGATAGACCACCTGTTCAGAACAACCATCATGACTCTGTGCCAGATTCactctactgacacaaacacagcacacgCATAATTatatacacacgcatacactGTAAATGTTTCGgttaacagattaaaaaaaaagggttttggAAAGAATCTCATATGTTGACCAAGGTTAAAAAACCCTCTTTCCTTGACATTGAATTTTGACATAAAGCTTCCATACCACTGTTggatttttcaaacttttcatgtTTTCAATGTTATTCGGCAggtttgtggtaaaaaaaaaatgttgtatgcGGTATTTGACTCTTTGAGTAAACTGCTGTGTACTTTAGATTGTGGGTTCAGCTGAGGTGAGATGAGCATTATTTCAGCCAaagggaaccataGATATGCAAAACACTCTACGGACAATGtgattgggctagttttgattcgCAGTTGGGTGGGTTTTGTTACACTTACCTGGCAAACTTGGCTAGAAGAATTGTTTGTGCAAATATAAGCTAACACTTTCATTGAACTTTCAAC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00036480 True 634 lncRNA 0.40 2 30092259 30099019

Neighbor


gene id symbol gene type direction distance location
XLOC_018161 sox11b coding downstream 56933 30032628 ~ 30035326 (-)
XLOC_018160 NA coding downstream 158501 29927185 ~ 29933758 (-)
XLOC_018159 rnf144ab coding downstream 227729 29836276 ~ 29864530 (-)
XLOC_018158 NA coding downstream 257721 29789942 ~ 29834538 (-)
XLOC_018157 id2b coding downstream 305049 29784927 ~ 29787210 (-)
XLOC_018163 NA coding upstream 24471 30123490 ~ 30258573 (-)
XLOC_018164 allc coding upstream 256417 30355436 ~ 30370927 (-)
XLOC_018165 rps7 coding upstream 273333 30372352 ~ 30377221 (-)
XLOC_018166 BX276180.4 coding upstream 273644 30372663 ~ 30372883 (-)
XLOC_018167 BX276180.2 coding upstream 274188 30373207 ~ 30373427 (-)
XLOC_017928 CU539064.1 misc downstream 20038558 10053405 ~ 10053701 (-)
XLOC_018156 NA non-coding downstream 400794 29687635 ~ 29691465 (-)
XLOC_018151 BX248136.1 non-coding downstream 596824 29495300 ~ 29495435 (-)
XLOC_018147 NA non-coding downstream 662797 29426938 ~ 29429462 (-)
XLOC_018168 BX276180.1 non-coding upstream 274846 30373865 ~ 30374084 (-)
XLOC_018169 BX276180.3 non-coding upstream 275667 30374686 ~ 30374906 (-)

Expression



Co-expression Network