Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_018411 |
| gene name | CR385078.6 |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 47120504 ~ 47125583 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0007517 | muscle organ development | biological_process |
| GO:0007519 | skeletal muscle tissue development | biological_process |
| GO:0035282 | segmentation | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:1901861 | regulation of muscle tissue development | biological_process |
| GO:0016202 | regulation of striated muscle tissue development | biological_process |
| GO:0048634 | regulation of muscle organ development | biological_process |
| GO:0048641 | regulation of skeletal muscle tissue development | biological_process |
| GO:0048646 | anatomical structure formation involved in morphogenesis | biological_process |
| GO:0000578 | embryonic axis specification | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0060537 | muscle tissue development | biological_process |
| GO:0060538 | skeletal muscle organ development | biological_process |
| GO:0032525 | somite rostral/caudal axis specification | biological_process |
| GO:0014706 | striated muscle tissue development | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0005730 | nucleolus | cellular_component |
| ensembl_id | ENSDARG00000096745 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00036202 | True | 786 | lncRNA | 0.45 | 3 | 47120504 | 47125583 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_018410 | CR385078.5 | coding | downstream | 14225 | 47104702 ~ 47106279 (-) |
| XLOC_018409 | FO904915.1 | coding | downstream | 42411 | 47077979 ~ 47078093 (-) |
| XLOC_018408 | dnmt3aa | coding | downstream | 68508 | 46967269 ~ 47051996 (-) |
| XLOC_018407 | CU571074.2 | coding | downstream | 160736 | 46957091 ~ 46959768 (-) |
| XLOC_018406 | NA | coding | downstream | 167386 | 46949770 ~ 46953118 (-) |
| XLOC_018412 | NA | coding | upstream | 14398 | 47139981 ~ 47142854 (-) |
| XLOC_018413 | NA | coding | upstream | 25910 | 47151493 ~ 47270519 (-) |
| XLOC_018414 | si:dkeyp-104f11.9 | coding | upstream | 62334 | 47187917 ~ 47188966 (-) |
| XLOC_018415 | NA | coding | upstream | 126978 | 47252561 ~ 47253408 (-) |
| XLOC_018416 | dtnba | coding | upstream | 164421 | 47290004 ~ 47348161 (-) |
| XLOC_017928 | CU539064.1 | misc | downstream | 37066803 | 10053405 ~ 10053701 (-) |
| XLOC_018405 | CU571074.1 | non-coding | downstream | 237017 | 46883360 ~ 46883487 (-) |
| XLOC_018417 | NA | non-coding | upstream | 253909 | 47379492 ~ 47422469 (-) |
| XLOC_018418 | NA | non-coding | upstream | 353189 | 47478772 ~ 47486967 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | G459447 | NA | non-coding | CI01000321 | null | 4629578 ~ 4631678 (-) |
| rainbow trout (Oncorhynchus mykiss) | trnap-cgg-214 | NA | coding | NW_023493868.1 | JAAXML020000511.1 | 4803 ~ 4874 (-) |
| eurasian perch (Perca fluviatilis) | trnap-cgg_6 | NA | coding | NW_024375680.1 | VHII01000050.1 | 9494 ~ 9565 (+) |
| striped catfish (Pangasianodon hypophthalmus) | G192070 | NA | non-coding | NC_047606.1 | CM018552.1 | 6789866 ~ 6790153 (-) |
| bowfin (Amia calva) | AMCG00009216 | NA | coding | CM030126.1 | CM030126.1 | 29163273 ~ 29171791 (-) |
| tiger barb (Puntius tetrazona) | trnaf-gaa_64 | NA | misc | NC_056709.1 | CM032078.1 | 2929193 ~ 2929270 (-) |
| tiger barb (Puntius tetrazona) | trnap-cgg_28 | NA | misc | NC_056709.1 | CM032078.1 | 2984278 ~ 2984349 (-) |
| mexican tetra (Astyanax mexicanus) | trnap-agg_90 | NA | coding | NW_019172892.1 | APWO02000086.1 | 450017 ~ 450088 (-) |
