XLOC_001845


Basic Information

Item Value
gene id XLOC_001845
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4809883 ~ 4810251 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005673
gaATATAGCCCAcggtcagtgcaaacctctcatctacgTCTTTAACcttcaccagcacatgttgcCTCTTGTTAGAACgtaattccgtcattctgagttcattagtccaaaaggcgatgataaacatggcagttcatgttttaggttgcagaagcatcatttgctgctgttttttccagcttctcttttgtttttttgcgCTTTACTCTTGCATTTGACTTGTTCTGAAAGGATCGAATATCAGAGTGCTTCAATGATCACGTGGAGgttattaatatgagctcaaaaAGTTCGTTACTTCAAATTTAGACACGATCGTGAGCTCTCTGGACAAAGTGAAACCGCTTGCATTTTAGatgggctcgtaaa

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0048769 sarcomerogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042383 sarcolemma cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0031672 A band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0031430 M band cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005673 True 369 lncRNA 0.40 1 4809883 4810251

Neighbor

gene id symbol gene type direction distance location
XLOC_001843 plk2a coding upstream 301353 4499943 ~ 4508530 (+)
XLOC_001842 dre-mir-430a-1 coding upstream 316525 4493277 ~ 4493358 (+)
XLOC_001841 NA coding upstream 468237 4335192 ~ 4341646 (+)
XLOC_001840 NA coding upstream 491020 4314963 ~ 4318863 (+)
XLOC_001839 NA coding upstream 510033 4289705 ~ 4299850 (+)
XLOC_001846 palm2akap2 coding downstream 64291 4874542 ~ 4911001 (+)
XLOC_001847 slc46a2 coding downstream 114137 4924388 ~ 4934610 (+)
XLOC_001848 NA coding downstream 151564 4961815 ~ 4963300 (+)
XLOC_001849 lyrm7 coding downstream 154212 4964463 ~ 4969208 (+)
XLOC_001850 CU074419.1 coding downstream 175799 4986050 ~ 4987483 (+)
XLOC_001834 NA non-coding upstream 951998 3857067 ~ 3857885 (+)
XLOC_001851 NA non-coding downstream 177515 4987766 ~ 4996049 (+)
XLOC_001857 NA non-coding downstream 422076 5232327 ~ 5234250 (+)
XLOC_001863 NA non-coding downstream 716939 5527190 ~ 5543141 (+)

Expression


Co-expression Network