XLOC_001848


Basic Information

Item Value
gene id XLOC_001848
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4961815 ~ 4963300 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005815
GGCGCTGCACTGCTCTGATCGCGCAGCTGTTTTTATTTCACTGCCGCACGAACCGAACCGAGGAGCCAAACATCTGTCAGCTGACGGACACCGCGCAGAACCGGAACACAACCGGTCAGCTGACGCGGAACACTTCCGGAAAAAAAGCACCTGTTTTCAAATTAAAAGCCCAACTTTTTCGCTTAAAAGTCTTCAAATATTCTGAtggtttatttgactttttattattaacaataggcgaagcggtggcacagtgggtggtGCTGCGGTCActtcacagctagaaggtcactggttcgagcctcggctggttcagttggtatttctgtgtggagtttgtatgttctccacgtgtttggtaagttaaattgtctgtagtgtacgtgcgtgaatgagagtgtatggaggttttccagtgatgggttgcggctggaagtgcatccgctgcataaaacatatgctggataagttggcggttcattccactgtggcgaccccaaattaataaagggactaagccgaaatgaatgaatgaatgaataaagatttGTTTGCgataaataatagttttattttaattttattttaataatagttttattttaataatagttttattttaattttattttaataatagttttattttaatttttcgcATTTGCGCAGTTCTGAACAGCAGGTGTCGCTAGTGTCTGAGTTCTGAACGCTTCGAATCCCTGAATCATTTGGCAAAGCTGCTGATTCGAATCTTTGAGGAAAAAAAGCTTCGTTTCTCCCTTCACTAGGCGGCAGTGATGTGTTACTGTGACTGAAGAAAACACAGAGGAAACAAAAGCAGAAGAAACACTCCCTCCATGTGGACGTGGTCTGTTTCTGGAGAAGCTTGAGCTGGCAGTCGCGAGAGTAAGGTATGTTATAggaatttatttgtaaatgtagAGAGAGTAACATTAACGTTACATTTAGCCGactgtttttgttgttatgtGCATAAATATTGATTTTCTTTTATCTGACCCAATGATTAAACACACTACCCATCTGACCCTGAGCAGGGGAAAGATTTAGTTTACTCTTATATGAGGGTCagtttaataacatatttttgtTAAAAGCATGAAAGtggttttattttggttttatttactgaaatgtttTCTTCGTTGTGTTTCATTTTCAGACAAAGGATCGAGTGTCCGGGCGAGAAACACGTGCGCCAGATTCAGCTCATCTCTTAATAAacgttttataaaatataaatgttccCTTTCTTGTGTTGTGGtgtttaatttgtacttttatgCTGTTCTGGTCTGTGAAatccaataaatttgttttttaacacatttgtgttgGTATTGCGTGAATTATGTTCC
>TCONS_00003665
tttcgcATTTGCGCAGTTCTGAACAGCAGGTGTCGCTAGTGTCTGAGTTCTGAACGCTTCGAATCCCTGAATCATTTGGCAAAGCTGCTGATTCGAATCTTTGAGGAAAAAAAGCTTCGTTTCTCCCTTCACTAGGCGGCAGTGATGTGTTACTGTGACTGAAGAAAACACAGAGGAAACAAAAGCAGAAGAAACACTCCCTCCATGTGGACGTGGTCTGTTTCTGGAGAAGCTTGAGCTGGCAGTCGCGAGAGTAAGACAAAGGATCGAGTGTCCGGGCGAGAAACACGTGCGCCAGATTCAGCTCATCTCTTAATAAacgttttataaaatataaatgttccCTTTCTTGTGTTGTGGtgtttaatttgtacttttatgCTGTTCTGGTCTGTGAAatccaataaatttgttttttaacacatttgtgttgGTATTGCGTGAATTATGTTCC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005815 False 1379 lncRNA 0.39 2 4961815 4963300
TCONS_00003665 True 454 lncRNA 0.42 2 4962575 4963300

Neighbor

gene id symbol gene type direction distance location
XLOC_001847 slc46a2 coding upstream 27205 4924388 ~ 4934610 (+)
XLOC_001846 palm2akap2 coding upstream 50814 4874542 ~ 4911001 (+)
XLOC_001844 palm2akap2 coding upstream 130597 4806323 ~ 4831218 (+)
XLOC_001845 NA coding upstream 151564 4809883 ~ 4810251 (+)
XLOC_001843 plk2a coding upstream 453285 4499943 ~ 4508530 (+)
XLOC_001849 lyrm7 coding downstream 1163 4964463 ~ 4969208 (+)
XLOC_001850 CU074419.1 coding downstream 22750 4986050 ~ 4987483 (+)
XLOC_001851 NA coding downstream 24466 4987766 ~ 4996049 (+)
XLOC_001852 enoph1 coding downstream 62396 5025696 ~ 5037449 (+)
XLOC_001853 carm1l coding downstream 96891 5060191 ~ 5090392 (+)
XLOC_001842 dre-mir-430a-1 non-coding upstream 468457 4493277 ~ 4493358 (+)
XLOC_001841 NA non-coding upstream 620169 4335192 ~ 4341646 (+)
XLOC_001840 NA non-coding upstream 642952 4314963 ~ 4318863 (+)
XLOC_001839 NA non-coding upstream 661965 4289705 ~ 4299850 (+)
XLOC_001857 NA non-coding downstream 269027 5232327 ~ 5234250 (+)
XLOC_001863 NA non-coding downstream 563890 5527190 ~ 5543141 (+)
XLOC_001864 NA non-coding downstream 624660 5587960 ~ 5588230 (+)

Expression


Co-expression Network