XLOC_001851


Basic Information

Item Value
gene id XLOC_001851
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4987766 ~ 4996049 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005674
GGTTAATGTGCAAACTGTCTGGGAGGGGAAGCTCTGTTTGCAAATGAGCTCTCTGAAGTTTCATCCTGTTCTTTTGTACTTGTGTTGTAGCTCACGGGACCGAGACGCTTCCTCTAGAAAACATACCTTTCAAGCAATGGTTGCAATCTTAGCCTGAACTTTCGGAAACTACCAGAAGTGGGACATTTGAGTTTTTACAAAAGCACCAGTATGGCCGACTACAACACTGAATCAGCAGCTCCTCCTAGCAAACTCAACCAAGTCCAGGATCAAGTCAATGATGTTAAAGTGATTCTCAAAGACAACATCAACAAAGTGTTGGAGAGAGGAGAGAGATTAGATGACCTGATCGGCAAAACAGATGATCTACAAGCAACGG
>TCONS_00003669
GGTTAATGTGCAAACTGTCTGGGAGGGGAAGCTCTGTTTGCAAATGAGCTCTCTGAAGTTTCATCCTGTTCTTTTGTACTTGTGTTGTAGCTCACGGGACCGAGACGCTTCCTCTAGAAAACATACCTTTCAAGCAATGGTTGCAATCTTAGCCTGAACTTTCGGAAACTACCAGAAGTGGGACATTTGAGTTTTTACAAAAGCACCAGTATGGCCGACTACAACACTGAATCAGCAGCTCCTCCTAGCAAACTCAACCAAGTCCAGGATCAAGTCAATGATGTTAAAGTGATTCTCAAAGACAACATCAACAAAGTGTTGGAGAGAGGAGAGAGATTAGATGACCTGATCGGCAAAACAGATGATCTACAAGCAACGGCGGACTCATTTCAAAGAACGTCCACGCATGTTGCCAGAAAGATGTGGTGGAGAAACACCAAGATGATGATTATAATTGGAGTGGTTGTCGTTGCCATCATTGTGTTAATCATTGTGTTAGCCACGCAAGTAAAGTAAAAACCATCCATTTCAATTCATTTGTATTCATAAagcacaagtacacacacacacactaaaaatgaacagctttttttttaagaCTAAGAATGTAACGTTTGGTCCGGGTAGATTTATGTGTAGATAAATTGCATATTAGTTTGTTGTATTGATATTCCCTGTCAGATTCTATTCAAATATTGTGTGAATATGTTAGGCCTTGTACACAATAGTTTCCAAAAATCATATCTTTCTAAAGATATTGCGTAATTGAGCTTGAAATGTGCAACTTGTATGTATGAAATGCGACAAATGTTATACGTTAAACGTGATTAtgctcaaattataataaaaatatgcagAACGA

Function

GO:

id name namespace
GO:0089709 L-histidine transmembrane transport biological_process
GO:0016485 protein processing biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0019866 organelle inner membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-041008-183 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in SNARE complex assembly and mucus secretion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in mucin granule and plasma membrane. Is expressed in Kupffer's vesicle.

Ensembl:

ensembl_id ENSDARG00000086996

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005674 False 379 lncRNA 0.44 2 4987766 4992038
TCONS_00003669 True 862 mRNA 0.38 3 4987766 4996049

Neighbor

gene id symbol gene type direction distance location
XLOC_001850 CU074419.1 coding upstream 283 4986050 ~ 4987483 (+)
XLOC_001849 lyrm7 coding upstream 18558 4964463 ~ 4969208 (+)
XLOC_001848 NA coding upstream 24466 4961815 ~ 4963300 (+)
XLOC_001847 slc46a2 coding upstream 53156 4924388 ~ 4934610 (+)
XLOC_001846 palm2akap2 coding upstream 76765 4874542 ~ 4911001 (+)
XLOC_001852 enoph1 coding downstream 29647 5025696 ~ 5037449 (+)
XLOC_001853 carm1l coding downstream 64142 5060191 ~ 5090392 (+)
XLOC_001854 zgc:113274 coding downstream 139793 5135842 ~ 5147582 (+)
XLOC_001855 si:ch211-249h16.8 coding downstream 153310 5149359 ~ 5156799 (+)
XLOC_001856 cdc42se2 coding downstream 163426 5159475 ~ 5221537 (+)
XLOC_001845 NA non-coding upstream 177515 4809883 ~ 4810251 (+)
XLOC_001842 dre-mir-430a-1 non-coding upstream 494408 4493277 ~ 4493358 (+)
XLOC_001841 NA non-coding upstream 646120 4335192 ~ 4341646 (+)
XLOC_001857 NA non-coding downstream 236278 5232327 ~ 5234250 (+)
XLOC_001863 NA non-coding downstream 531141 5527190 ~ 5543141 (+)
XLOC_001864 NA non-coding downstream 591911 5587960 ~ 5588230 (+)
XLOC_001867 NA non-coding downstream 792358 5788407 ~ 5793526 (+)
XLOC_001868 NA non-coding downstream 884651 5880700 ~ 5881233 (+)

Expression


Co-expression Network