XLOC_001857


Basic Information

Item Value
gene id XLOC_001857
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5232327 ~ 5234250 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005675
ctgataaataatggaccgAGCTGGagaagaatgaatgaacgaatgaattactATCGCTTATGGTAGCCTGCTTTGCAATTCCAAATTCGGTTGTGGTCGGTTTAAATGCCACAAGAACAAGTAGTCGCACTAATACCAAATTTACCAGGACAAAACAAGagtattttaaaagtttaagagctataaaagtaatttttgaatgtttttatacCATTCTCCTAATCAATATGAATGataTCTAAAGTGGTTGTTACATTTCAagacaacacaaaacaacagcaacaacggcaacacacacacacacacacacacacacacacacacacacaatactgcaTTTCCCCCATAACATTCTCCAGCAGCCTATATTAAATGTTCAGCTTACCAAACGGTATGCAACAGTACAAGAAATGTAACAAATGGTTTCTTTATAACCATAACGTAATGCTGGTTTGATGGTGACCAAGCAAATGACATCACATTCAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005675 True 488 lncRNA 0.36 2 5232327 5234250

Neighbor

gene id symbol gene type direction distance location
XLOC_001856 cdc42se2 coding upstream 10790 5159475 ~ 5221537 (+)
XLOC_001855 si:ch211-249h16.8 coding upstream 75528 5149359 ~ 5156799 (+)
XLOC_001854 zgc:113274 coding upstream 84745 5135842 ~ 5147582 (+)
XLOC_001853 carm1l coding upstream 141935 5060191 ~ 5090392 (+)
XLOC_001852 enoph1 coding upstream 194878 5025696 ~ 5037449 (+)
XLOC_001858 sptlc1 coding downstream 77 5234327 ~ 5265160 (+)
XLOC_001859 ror2 coding downstream 33804 5268054 ~ 5407509 (+)
XLOC_001860 si:dkey-60d5.3 coding downstream 175258 5409508 ~ 5410985 (+)
XLOC_001861 nfil3 coding downstream 179974 5414224 ~ 5419256 (+)
XLOC_001862 auh coding downstream 188325 5422575 ~ 5475690 (+)
XLOC_001851 NA non-coding upstream 236278 4987766 ~ 4996049 (+)
XLOC_001850 CU074419.1 non-coding upstream 244844 4986050 ~ 4987483 (+)
XLOC_001848 NA non-coding upstream 269027 4961815 ~ 4963300 (+)
XLOC_001845 NA non-coding upstream 422076 4809883 ~ 4810251 (+)
XLOC_001842 dre-mir-430a-1 non-coding upstream 738969 4493277 ~ 4493358 (+)
XLOC_001863 NA non-coding downstream 292940 5527190 ~ 5543141 (+)
XLOC_001864 NA non-coding downstream 353710 5587960 ~ 5588230 (+)
XLOC_001867 NA non-coding downstream 554157 5788407 ~ 5793526 (+)
XLOC_001868 NA non-coding downstream 646450 5880700 ~ 5881233 (+)
XLOC_001871 NA non-coding downstream 882044 6116294 ~ 6116936 (+)

Expression


Co-expression Network