XLOC_001861 (nfil3)


Basic Information

Item Value
gene id XLOC_001861
gene name nfil3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5414224 ~ 5419256 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003686
AGATCCACGAACAGCAGCCACTCCAGCAGGAAAACGCAAAGGAGAAACACAAGTATCATTTCCAGATGGGATTTTATTGCAGCTGATGAAACACTTCTTAATGTTTTCACGCGCACTATTTATTCCGGATCTCCATCTAAGTGGGGTTTTGGTTACTAGAGATAACCACTGAATTCTCTGAAACTGACTTCACGAAGAGGATACACATGACTTTTATTGCACTTGGTCTACGATGAGATGTTTATTTAAAACCAGAGTCGACTAAAGAGCTTATGCAGTCTTGATGACATCATTGTGTAATATGCAAGCCATTAAGAAAGAGCCCCCATGCAGTGGGCCCTACGGTGGAGAGGACGCCTTGGTGCTGGCTGTAGCTTTGCAAGGGACAGACAGGGACCTGATTAACCACAAACTGTCCACCCTACCTTTCAAGTCCAAGTCCACCAGCTGTCGCCGGAAACGTGAGTTCATACCCGATGAGAAGAAAGACAACCTATATTGGGAGAGAAGGCGCAAGAACAATGAAGCAGCCAAGCGCTCCAGGGAAAAGCGCAGACTAAATGACATGGTTCTGGAGAACAAGCTTATGGCCCTTGGGGAAGAGAACGCATCGCTGAAAGCTGAGCTTTTGTCACTTAAACTCAGGTTTGGTCTAGTGAGCTCAGCCGCTTATGCTCAGGAGGTGCAGAACATCTCCACTTCCACTGCTGCGCTCTACCAGGACTTTATGTCACCCAGTGCCACCAAGGATTCCTACCCAAGTGATCTGGAGCCAACGCGTTTGACCAGCAGCTGCATTTCGGTCATCAAGCACTCACCTCACAGCGCCTTGTCCGACGGATCTGACTCTAGCACAGTTACCCAGGGAAGCCCCCTAATAAATATTTCTAGATCCCCTGACAGCATCAAACAAGAACCCCTGGAAACTGGCAGATACTCCAAAGAGAGGATCAGTCCTTATGAACTCTACAGGAACTACCTTAGTAGTCCTTTTCCTGGGAACTTCTCCCAGCCATCTCCGTTCTTACAAATCGCTAGATCGTCTAGCAATTCGCCACGAACATCTGATGGCGACGATGGCGCCGTAAGCAAGTCCTCCGATAATGAGGATGAACAGCAGGTCCCAAAGGGTCCAGTTCCAACCAGGTCTGATTCACAGAGCGTGATTGTGTCAACTCTCAAAGTGCCAGATTCCAGTGCCTCAGCTTTACCTCACAAGTTGAGGATCAAAGCCCGGGCCATCCAGATTAAAGTGGAGGCAATCGATCCCGATTATGAATCATCTGGAAAGTCCTCCTTTCCCGTTGACATGTCTGCAAGAAGACGCTACCAAATGAGTCAGTGTGCTACACCCGAGTACATTCAATCATCTCTTAGCCCGATGTCCTTCCAGATGACCAATGTTCAGGACTGGAATCACCGACCGAAGGAATGGCACGAGGATCACCAGGAGGCCCTAACTAGCTACAAATACCGGCAATGTCCAGACTCACCAAGACCTGTGCCTAACAAACTCATCGTTGACCTTGAAAATGACTCGTATGCCAACTCTGAATCTGAGAATTTGTACTTGAAGCAGGGCATTGAGGATTTGTCGGCAGAAGTGGCCTGCTTGAAAAGACTGATTTCAAAACAGCAGGGGTCTGTTATTGAGTCCACGAAAAGCACTACTGAAATTGACTCCTCATGAAAAGGATGTTTCTGAAACGGAGTTCCCTCAATTTGCACAACGCCTGTTTTCCACTGTGTTCGCTACTGCACTGTGCGGTTGTTATGGTGTCAAAAACCTGCACTTCATTGAGAAGAATGGTGTTTTGTGCACTTACTGTCGTAGTTTGGCGTGTCTTCTTGATGACTCCAGTTGTAGCTCAAAAGCCAAAAATTGGGCTGCTGTTAATGTTAACTTCTCGAATTGTATTGTACATtgtatgttttcttttgtttacaaTAAATGCAA

Function

symbol description
nfil3 Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within heart development and myeloid cell development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in brain; margin; retina; and tail bud. Orthologous to human NFIL3 (nuclear factor, interleukin 3 regulated).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048511 rhythmic process biological_process
GO:0006955 immune response biological_process
GO:0061515 myeloid cell development biological_process
GO:0007623 circadian rhythm biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-040822-28 Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within heart development and myeloid cell development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in brain; margin; retina; and tail bud. Orthologous to human NFIL3 (nuclear factor, interleukin 3 regulated).

Ensembl:

ensembl_id ENSDARG00000042977

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003686 True 1957 mRNA 0.47 2 5414224 5419256

Neighbor

gene id symbol gene type direction distance location
XLOC_001860 si:dkey-60d5.3 coding upstream 3239 5409508 ~ 5410985 (+)
XLOC_001859 ror2 coding upstream 6715 5268054 ~ 5407509 (+)
XLOC_001858 sptlc1 coding upstream 149064 5234327 ~ 5265160 (+)
XLOC_001857 NA coding upstream 179974 5232327 ~ 5234250 (+)
XLOC_001856 cdc42se2 coding upstream 192687 5159475 ~ 5221537 (+)
XLOC_001862 auh coding downstream 3319 5422575 ~ 5475690 (+)
XLOC_001863 NA coding downstream 107934 5527190 ~ 5543141 (+)
XLOC_001864 NA coding downstream 168704 5587960 ~ 5588230 (+)
XLOC_001865 pdzph1 coding downstream 225100 5644356 ~ 5655109 (+)
XLOC_001866 pam coding downstream 270254 5689510 ~ 5787286 (+)
XLOC_001851 NA non-coding upstream 418175 4987766 ~ 4996049 (+)
XLOC_001850 CU074419.1 non-coding upstream 426741 4986050 ~ 4987483 (+)
XLOC_001848 NA non-coding upstream 450924 4961815 ~ 4963300 (+)
XLOC_001845 NA non-coding upstream 603973 4809883 ~ 4810251 (+)
XLOC_001867 NA non-coding downstream 369151 5788407 ~ 5793526 (+)
XLOC_001868 NA non-coding downstream 461444 5880700 ~ 5881233 (+)
XLOC_001871 NA non-coding downstream 697038 6116294 ~ 6116936 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_01970027_01971430 NFIL3 coding CI01000304 null 1970027 ~ 1971430 (-)