XLOC_001862 (auh)


Basic Information

Item Value
gene id XLOC_001862
gene name auh
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5422575 ~ 5475690 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003687
AGAGTTGAAAGTCAGGGAAGGCTGCAGCATGGCGGCTATAGTGAGGTGTAGAGCGCTTTTTCAGCTTTGTcgctctcaaataaacatttCCAACGGCGTTTACAGATCGGACAGTGTTTTGCAAACATGTCTTCCTAAAAGGTTGCCTTGTGTGCATCGTGCGTTCAGCGGAGGTGTGCGACTGTACAGCTCTGAAGTTAATTCTGGAGATGACCTTATCGTTAGATACCTGGACGGTGATGATTCAGGGATTGTTGTTATGGGGATTAATCGCCCTGAAGCTAAAAATGCCATCAGCAAAAATCTTGTTTCCATGATGTCCGAAGCCTTAGAGTCTATGAAGACGGACAACACAGTGCGTACTGTAATCTTATGCAGTATGGTGCCAGGAATATTCTGTGCAGGTGCAGACTTAAAGGAAAGAGCAAAAATGCAACAGAGTGAAGTGGGACCGTTTGTCACTAAAGCGAGGACACTTATATCAGAGCTCGGTGCTCTTCCCATGCCAACAATTGCAGCCATTGACGGGGCGGCTCTTGGAGGAGGTCTTGAAATGGCTCTTGCGTGTGACATCAGAGTAGCAGCTAACTCTGCAAAGATGGGACTTGTTGAGACTAAATTAGCCATCATCCCAGGCGCTGGAGGAACTCAGCGTCTTCCACGAACTGTAGGAGTGTCCATAGCAAAAGAGCTGATATTTGCGGCACGAGTGTTAAACGGTGAAGAAGCCAAGAGTCTCGGCCTGGTGAATCACGCTGTGGAGCAGAATAAGGGTGGAGATGCTGCGTATCTGAGAGCTCTGGATCTTGCTCGGGAATTCATCCCTCAGggGCCAATTGCTGTACGAATGGCAAAGTTGGCAATCAACCAGGGAATAGAGGTGGATTTAAAGACCGGATTAGCTATTGAAGAAGCATGTTATTCTCAGGTGATCCCGACTAAAGACAGGCTGGAAGGTTTGCTGGCGTTCAAAGAGAAACGTCCTCCTCGCTTTAAGGGCGAGTAAAAGCGGCCCAGTGATGCCACTTACATGCAGCTGCCTTTAAATCGCCTTTCACTATTGTCGGGTCACAAAAAGAGTGTGTCGCATACCTGAAATTCCAGAAGCGCCGCTTAGCCCCTGCGGCCCGACGATGGTAAAACCTGCAGGGATTTCAGCCAAAATATGCGATGAGTAAGCCTGAGATCCTTAATCTACGGATCAACTTTTGTTAGGGTGGTATGTGCTTTTGTTGTTCTTCTGAACTTTTCTTTTGGTTGTACCTGTTTGTAATGTAAAAGTTGTTGTTTTGTCCCTGCAGTTTATATAATTAGGAATGAACACTAAATGGACAGTAAAGTTTTCTGTCAACAGTATAGAGTAAATTTAAAAcgaaaatgaaaatgtataacaCAAAATCTGGTTGGGTTTGTTGATTCCAGGAATTGTCACTATTTCACAATAAAGCTGCTTTCACTTCGAATGTGGGTTAATAAGTAGTTCAGTCAACAACTAACCAGTTTTGGCCCTGAGGATAGTGTCTGTTTCATTGTAATGAATTTAGTGTTTATCGATTAATTGTGTACAAAATAaccatttatatttacataa

Function

symbol description
auh Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 1 and renal tubular transport disease. Orthologous to human AUH (AU RNA binding methylglutaconyl-CoA hydratase).

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005739 mitochondrion cellular_component
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation

ZFIN:

id description
ZDB-GENE-040801-95 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 1 and renal tubular transport disease. Orthologous to human AUH (AU RNA binding methylglutaconyl-CoA hydratase).

Ensembl:

ensembl_id ENSDARG00000042975

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003687 True 1591 mRNA 0.44 10 5422575 5475690

Neighbor

gene id symbol gene type direction distance location
XLOC_001861 nfil3 coding upstream 3319 5414224 ~ 5419256 (+)
XLOC_001860 si:dkey-60d5.3 coding upstream 11590 5409508 ~ 5410985 (+)
XLOC_001859 ror2 coding upstream 15066 5268054 ~ 5407509 (+)
XLOC_001858 sptlc1 coding upstream 157415 5234327 ~ 5265160 (+)
XLOC_001857 NA coding upstream 188325 5232327 ~ 5234250 (+)
XLOC_001863 NA coding downstream 51500 5527190 ~ 5543141 (+)
XLOC_001864 NA coding downstream 112270 5587960 ~ 5588230 (+)
XLOC_001865 pdzph1 coding downstream 168666 5644356 ~ 5655109 (+)
XLOC_001866 pam coding downstream 213820 5689510 ~ 5787286 (+)
XLOC_001867 NA coding downstream 312717 5788407 ~ 5793526 (+)
XLOC_001851 NA non-coding upstream 426526 4987766 ~ 4996049 (+)
XLOC_001850 CU074419.1 non-coding upstream 435092 4986050 ~ 4987483 (+)
XLOC_001848 NA non-coding upstream 459275 4961815 ~ 4963300 (+)
XLOC_001845 NA non-coding upstream 612324 4809883 ~ 4810251 (+)
XLOC_001868 NA non-coding downstream 405010 5880700 ~ 5881233 (+)
XLOC_001871 NA non-coding downstream 640604 6116294 ~ 6116936 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location