XLOC_001863


Basic Information

Item Value
gene id XLOC_001863
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5527190 ~ 5543141 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005817
TGTATTTCTTTAGTCTCAAACACCAACATGCAATAAGTGGACGTTATATACACAGCAATTTACAACAGATTTGCCCACTTTGAGACACCAAACCCCTTTTTTCAAACCAACAAGAGCAGGGGAGCTGCTTCTCTGTGTGTCTGCTGAGGATCTGATGTGTTCAATGCTGAGAATAAACACATGTAAAGCAGCAGAATGGACAATGTTGCCAGTTTGTCTGAAGATGGTCTGCTATCATCCCTGAGCCCATGAGTTCAGCGTCACATGCAAATAATTCTAAAGATCCCAATCATGCGGACTATGTATGGATTATCCAGCTGCTGCATGACGTTCGCCTCCCGCAACATCTCGTCCTTTACTGCTGCATTATCGTCATCATTCTTTAGGATCTTAACAGCAACAACCTTCTGTGTTCTGAAGTAAACAAACCACATACACTCTTAAAATGTGTCTGAAAGAAACACTCAGttaatttttgaaaataaaaacatttagaacCCATTAAGCCAATTTTTTTAGTCAGGCAGTGGCACTTtgaacttagcttagcatagattagaccattagcatctcactcaaaaaatccaaaaaagaaaattaaagcttgactcttctctGGTTACATTGTGTAGACCAACCGAAAATGAAACGTTGCTATTTTATAGGCTGATATGTCCAGGAACTATAATCTtgttctggcgtaataatcaagtaactttactgctgtaccatggctgcagcggGCACAATGTAATTACCTACTGCTTTTGCTATagattttgctgtttgtttaaacaatttttaaaaaatgagctgaaacaacacaattattgagagtttttttgacacattttatgttcaatccacttaaatttataaaaactcagttaaattgattgtgtggaacccagcattttcaaCAGTGTGTAGTTACCCAGCAAGGGGCTTTcatttttggtcagttttacagtacacgatgtaactacagaggagtcaagctttaaataggaaagtgtttaaaactctttttaaagATTCTGAGATGCTAATTGTCAAAGAAAAAGtccatgatctatgctaagctaagctaaaattgctcccGCCAGAGTTCAGCTGAAGGgtttcaaaaatatttgttttgtaaatgattTATTACATGTTTAAAACATATTGAAACAGACTGCAATTTATGCAAATATGTCGTTGCACTATGCCTGATCATGGTAGATCATCCGCATTTTATGAGCATCGGCTTATTTGCCACAATGCTAATTTGTTCTGTGCTTTTTGCATTTGTCAATATATAAATAAGATGCTACTGTTTGTTCTTTAATCTGTGCATTTTCTGTAAATCATCAGCAGATATTTTTACA
>TCONS_00005816
TGTATTTCTTTAGTCTCAAACACCAACATGCAATAAGTGGACGTTATATACACAGCAATTTACAACAGATTTGCCCACTTTGAGACACCAAACCCCTTTTTTCAAACCAACAAGAGCAGGGGAGCTGCTTCTCTGTGTGTCTGCTGAGGATCTGATGTGTTCAATGCTGAGAATAAACACATGTAAAGCAGCAGAATGGACAATGTTGCCAGTTTGTCTGAAGATGGTCTGCTATCATCCCTGAGCCCATGAGTTCAGCGTCACATGCAAATAATTCTAAAGAAACTTGTGAAGCGGCCCCAGTTCAGCGAGCTCCATAACCAGCATAAGGTTTTCCGCTTCACAGATCCCAATCATGCGGACTATGTATGGATTATCCAGCTGCTGCATGACGTTCGCCTCCCGCAACATCTCGTCCTTTACTGCTGCATTATCGTCATCATTCTTTAGGATCTTAACAGCAACAACCTTCTGTGTTCTGAAGTAAACAAACCACATACACTCTTAAAATGTGTCTGAAAGAAACACTCAGttaatttttgaaaataaaaacatttagaacCCATTAAGCCAATTTTTTTAGTCAGGCAGTGGCACTTtgaacttagcttagcatagattagaccattagcatctcactcaaaaaatccaaaaaagaaaattaaagcttgactcttctctGGTTACATTGTGTAGACCAACCGAAAATGAAACGTTGCTATTTTATAGGCTGATATGTCCAGGAACTATAATCTtgttctggcgtaataatcaagtaactttactgctgtaccatggctgcagcggGCACAATGTAATTACCTACTGCTTTTGCTATagattttgctgtttgtttaaacaatttttaaaaaatgagctgaaacaacacaattattgagagtttttttgacacattttatgttcaatccacttaaatttataaaaactcagttaaattgattgtgtggaacccagcattttcaaCAGTGTGTAGTTACCCAGCAAGGGGCTTTcatttttggtcagttttacagtacacgatgtaactacagaggagtcaagctttaaataggaaagtgtttaaaactctttttaaagATTCTGAGATGCTAATTGTCAAAGAAAAAGtccatgatctatgctaagctaagctaaaattgctcccGCCAGAGTTCAGCTGAAGGgtttcaaaaatatttgttttgtaaatgattTATTACATGTTTAAAACATATTGAAACAGACTGCAATTTATGCAAATATGTCGTTGCACTATGCCTGATCATGGTAGATCATCCGCATTTTATGAGCATCGGCTTATTTGCCACAATGCTAATTTGTTCTGTGCTTTTTGCATTTGTCAATATATAAATAAGATGCTACTGTTTGTTCTTTAATCTGTGCATTTTCTGTAAATCATCAGCAGATATTTTTACA
>TCONS_00003688
ACAAGAGCAGGGGAGCTGCTTCTCTGTGTGTCTGCTGAGGATCTGATGTGTTCAATGCTGAGAATAAACACATGTAAAGCAGCAGAATGGACAATGTTGCCAGTTTGTCTGAAGATGGTCTGCTATCATCCCTGAGCCCATGAGTTCAGCGTCACATGCAAATAATTCTAAAGAAACTTGTGAAGCGGCCCCAGTTCAGCGAGCTCCATAACCAGCATAAGGTTTTCCGCTTCACAGATCCCAATCATGCGGACTATGTATGGATTATCCAGCTGCTGCATGACGTTCGCCTCCCGCAACATCTCGTCCTTTACTGCTGCATTATCGTCATCATTCTTTAGGATCTTAACAGCAACAACCTTCTGTGTTCTGAAGTAAACAAACCACATACACTCTTAAAATGTGTCTGAAAGAAACACTCAGttaatttttgaaaataaaaacatttagaacCCATTAAGCCAATTTTTTTAGTCAGGCAGTGGCACTTtgaacttagcttagcatagattagaccattagcatctcactcaaaaaatccaaaaaagaaaattaaagcttgactcttctctGGTTACATTGTGTAGACCAACCGAAAATGAAACGTTGCTATTTTATAGGCTGATATGTCCAGGAACTATAATCTtgttctggcgtaataatcaagtaactttactgctgtaccatggctgcagcggGCACAATGTAATTACCTACTGCTTTTGCTATagattttgctgtttgtttaaacaatttttaaaaaatgagctgaaacaacacaattattgagagtttttttgacacattttatgttcaatccacttaaatttataaaaactcagttaaattgattgtgtggaacccagcattttcaaCAGTGTGTAGTTACCCAGCAAGGGGCTTTcatttttggtcagttttacagtacacgatgtaactacagaggagtcaagctttaaataggaaagtgtttaaaactctttttaaagATTCTGAGATGCTAATTGTCAAAGAAAAAGtccatgatctatgctaagctaagctaaaattgctcccGCCAGAGTTCAGCTGAAGGgtttcaaaaatatttgttttgtaaatgattTATTACATGTTTAAAACATATTGAAACAGACTGCAATTTATGCAAATATGTCGTTGCACTATGCCTGATCATGGTAGATCATCCGCATTTTATGAGCATCGGCTTATTTGCCACAATGCTAATTTGTTCTGTGCTTTTTGCATTTGTCAATATATAAATAAGATGCTACTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000099204

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005817 False 1373 lncRNA 0.36 3 5527190 5543141
TCONS_00005816 False 1437 lncRNA 0.37 3 5527190 5543141
TCONS_00003688 True 1277 lncRNA 0.37 2 5529734 5543090

Neighbor

gene id symbol gene type direction distance location
XLOC_001862 auh coding upstream 51500 5422575 ~ 5475690 (+)
XLOC_001861 nfil3 coding upstream 107934 5414224 ~ 5419256 (+)
XLOC_001860 si:dkey-60d5.3 coding upstream 116205 5409508 ~ 5410985 (+)
XLOC_001859 ror2 coding upstream 119681 5268054 ~ 5407509 (+)
XLOC_001858 sptlc1 coding upstream 262030 5234327 ~ 5265160 (+)
XLOC_001864 NA coding downstream 44819 5587960 ~ 5588230 (+)
XLOC_001865 pdzph1 coding downstream 101215 5644356 ~ 5655109 (+)
XLOC_001866 pam coding downstream 146369 5689510 ~ 5787286 (+)
XLOC_001867 NA coding downstream 245266 5788407 ~ 5793526 (+)
XLOC_001868 NA coding downstream 337559 5880700 ~ 5881233 (+)
XLOC_001857 NA non-coding upstream 292940 5232327 ~ 5234250 (+)
XLOC_001851 NA non-coding upstream 531141 4987766 ~ 4996049 (+)
XLOC_001850 CU074419.1 non-coding upstream 539707 4986050 ~ 4987483 (+)
XLOC_001848 NA non-coding upstream 563890 4961815 ~ 4963300 (+)
XLOC_001845 NA non-coding upstream 716939 4809883 ~ 4810251 (+)
XLOC_001871 NA non-coding downstream 573153 6116294 ~ 6116936 (+)
XLOC_001884 NA non-coding downstream 1211129 6754270 ~ 6755766 (+)

Expression


Co-expression Network