XLOC_001877 (si:ch211-57m13.3)


Basic Information

Item Value
gene id XLOC_001877
gene name si:ch211-57m13.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6625785 ~ 6630364 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003715
GAACAGTGATTATCGACTTTAGCGACTTGTTTTGCATCTCAAATGGCAAATAACACGTCAGCTGCGTTTTTTACTCGACTTAATTTGATTAAGACAGTATTTGTCAACCATAATCATCAAAGTGACACGATGGCTTCTCCTACACCTCCTACCGGTATGAGAAGCCCAACAGAAAATCCAGAAAAAAGGAGGAAAGGGAATAAAGCCTCTGCTTTCTTCAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGGCCGGAACAGAGTGGCTCCATTTGAACCACAGTCGGATATCGATGATTGCGAGCATCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGACCCTCAGCCgttgagtgttccgggcccctCCAGGATCAAGCAAACAGCAGATCCGGCCCGTCCTGAGTCCTCAACGGCCCTGACAGGTCATGTTGACACTGAGCTGGTGTGTCTGCCAGGCCAGATCTGGGAAGATCCTCAGCCAATCAGTGTCCATGGCCTCGCCAATATTAAGAACATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTGATATTGATGGGACTGATGaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTCAAGAGAGTATGGAAGGCTGCAACGTGCCCTTTCCTGTGCTGTGACACCGATGTAGTCCAGCATCTTACACCACAACCTGAACCTGAACCTGAGCCAGAGCCAGAGTCAGAGTCAGATTCCGAGTCCGAGTCCGAGCCTGAGCCTGAGTCAGCGCCAAAATCCGAGTCCGAGCCCGAGCTCCGGCCAGAGTCTGAGCCAGGGCTGGAGAATGAAGCTGATCCTGAGTCAGTATGTCTGCCAGGCCCAGCTCCTGAAGAGCCTAAAGAGGCTTCTGTGCCCACTCGTAgattTGATTTGTCTGACTTTAAAGTAGACAGCATGATTGGAGAAGGAGCTTTTGGCAAGGTGTATGTGGCATCTCACAAACTTCGTGAAAGTGAAAAGGTTGCCCTGAAGTCTATAACCAAGCTTAAACAGGACCAATATCTCAACATTGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAGGTTGATGAATGCTCCGCAATGCCCAAATATCATTGGATTACACGACTGGATTGAGAATGAGAGCAGCTTCCTTCTCGTCTTGGAGTACCCAGAGTCAAGCCGGACCTTGGCTGATTACATCACAGTGAGATGGCGAATTAGTGAAAAGCGAGCACGCCGGTTAATTCGTCAGTTGATCCGAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGCGATATCCACACGGAGAACATCCTGGTGACGAAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCAGTGAATTTCGAGGAGCCAGTGGGATCACGCCACCTGAGGTTTTCAAGGATCCCACATTCTATGCTGACCCGGCAAACATTTGGCAAATAGGCAGCGTGCTGTACGATATATTGCATGCAGAATTGCCCTTTTCTGACAAAGATTCAGTAATGTTTGCATCCCTTGAGACACACCCCAGGTTAACTCCAGTATGCCAGAACCTGCTTTCCCAGTGTTTGGCCCGCTGTCCACTTGAGCGGCTGCAGTTACATCAGTTAGAAAAGCACCGGTGGTTCAATCCAACGACCCCAAATCCTGCGCAGCAGTTAAACAAGAGGAGaaaacaCTAAAGTGAGAAAGTGGAAAGCACAATTAAAGTCACTAAACTAGCATTATCAGTTATTAATtactccctcatgtcattccaaacccctcaGATCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttatccgtcagcagtgcgacacacatCCAGTGCAGTACAGGACTTctgaagtcattatttttgtttaaatcattttgtttttctttctgcatTAAAGAAGTTTCGCTCCAAACCCCTGACACCTTTCCtc
>TCONS_00005820
ATGATTGGAGAAGGAGCTTTTGGCAAGGTGTATGTGGCATCTCACAAACTTCGTGAAAGTGAAAAGGTAGAGAACTATTTTTTACATTCAGTCAGCATTTTCCtcctaattattaaatattaatagtttGTTGGCTTTAATTTGCCACTTACTTTGAAAAATTGACTGTTTTTTTTCGCAGGTTGCCCTGAAGTCTATAACCAAGCTTAAACAGGACCAATATCTCAACATTGTAAGTTGAATAATTCACACAACAATAACATTTTCCAGTTTTTGTTTCTGTACTTTGTTTCATTCTGCTCTGGTAATATCTTTGAAATCTGTTGTTCTTTCTAGGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGC

Function

symbol description
si:ch211-57m13.3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095853

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003715 False 2182 mRNA 0.49 10 6625785 6630364
TCONS_00005820 True 379 lncRNA 0.35 1 6628619 6628997

Neighbor

gene id symbol gene type direction distance location
XLOC_001876 si:ch211-57m13.1 coding upstream 6952 6613279 ~ 6618833 (+)
XLOC_001875 reep5 coding upstream 107720 6496185 ~ 6518065 (+)
XLOC_001874 APH1A coding upstream 216004 6383270 ~ 6409781 (+)
XLOC_001873 tpm2 coding upstream 250391 6318227 ~ 6375394 (+)
XLOC_001872 tln1 coding upstream 311880 6121558 ~ 6313905 (+)
XLOC_001878 si:ch211-57m13.5 coding downstream 11150 6641514 ~ 6646684 (+)
XLOC_001879 si:ch211-57m13.6 coding downstream 34547 6664911 ~ 6670283 (+)
XLOC_001880 si:ch211-57m13.7 coding downstream 51159 6681523 ~ 6686975 (+)
XLOC_001881 si:ch211-57m13.8 coding downstream 67005 6697369 ~ 6702812 (+)
XLOC_001882 si:ch211-57m13.9 coding downstream 99306 6729670 ~ 6734797 (+)
XLOC_001871 NA non-coding upstream 508849 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 744552 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 832259 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1037555 5587960 ~ 5588230 (+)
XLOC_001863 NA non-coding upstream 1082644 5527190 ~ 5543141 (+)
XLOC_001884 NA non-coding downstream 123906 6754270 ~ 6755766 (+)
XLOC_001890 BX537303.1 non-coding downstream 942952 7573316 ~ 7578051 (+)
XLOC_001897 NA non-coding downstream 1178347 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 1213042 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 1240245 7870609 ~ 7901888 (+)

Expression


Co-expression Network