XLOC_001878 (si:ch211-57m13.5)


Basic Information

Item Value
gene id XLOC_001878
gene name si:ch211-57m13.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6641514 ~ 6646684 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003716
GAAATTCCTCAGAGTGACAAACGAACGAGTAGAGTGAACAGTGATTATCGACTTTAGCAACTTGTTTTGCATCTCAAATGGCAAATAACACGTCAGCTGCGTTTTTTACTCGACTTAATTTGATTAAGACAGTATTTGTCAACCATAATCATCAAAGTGACACGATGGCTTCTCCTACACCTCCTACCGTGATGAGAAGCCCAACAGAAAATCCAGAGAAAAGGAGGAAAGGGAATAAAGCCTCTGCTTTCTTCAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGGCCGGAACAGAGTGGCTCCATTTGAACCACAGTCGGATATCGATGATTGCGAGCATCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGACCCTCAGCCgttgagtgttccgggcccctCCAGGATCAAGCAAACAGCAGATCCGGCCCGTCCTGAGTTCTCAAAGGCCCTCACAGGTCATGTTGACACTGAGCTGGTGTGTCTGCCAGGCCAGATCTTGGAAGATCCTCAGCCAATCAGTGTCCATGGCCTCACCAATATTAAGAACATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTGATATTGATGGGACTGATGaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTCAAGAGAGTATGGAAGGCTGCAACGCGCCCTTTCCTGTGCTGTGACACAGATGTAGTCCAGCATCTTACACCACAACCTGAACCTGAACCTGAACCAGAGTCAGAGCCAGAGCCAGAGTCAGAGTCAGAGCCAGAGTCAGAGCCAGAGTCAGAGTCAGAGTCCGAGTCCGAGGCCGAGTCCGAGCTCCGGCCAGAGTCTGAGCCAGGGCTGGAGAATGAAGCTGACCCTGAGGCAGTGCCTGCTGAAATTATGCCTGAAATCGCAGAACCCGCTGACCCTGAGTCAGTATGTCTGCCAGGCCCAGCGCCTGAAGAGCCTAAAGAGGCTTCTGTGCCCACTCGTAGATTTGATCTGTCTGACTTTAAAGTAGACAGCATGATTGGAGAAGGAGCTTTTGGCAAGGTGTATGTGGCATCTCACAAACTTCGTGAAAGTGAAAAGGTTGCCCTGAAGTCTATAACCAAGCTTAAACAGGACCAATATCTCAACATTGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAGGTTGATGAATGCTCCGCAATGCCCAAATATCATTGGATTACACGACTGGATTGAGAATGAGAGCAGCTTCCTTCTCGTCTTGGAGTACCCAGAGTCAAGCCGGACCTTGGCTGATTACATCACAGTGAGATGGCGAATTAGTGAAAAGCGAGCACGCCGGTTAATTCGTCAGTTGATCCGAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGCGATATCCACACGGAGAACATCCTGGTGACGAAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCAGTGAATTTCGAGGAGCCAGTGGGATCACGCCACCTGAGGTTTTCAAGGAGCCCACATTCTATGCTGACCCAGCAAACATTTGGCAAATAGGCAGCGTGCTGTACGATATATTGCATGCAGATTTGCCCTTTTCTGACAAAGATTCAATAATGTTTGCATCCCTTGAGACACACCCCAGGTTAACTCCAGTATGCCAGAACCTGCTTTCCCAGTGTTTGGCCCGCTGTCCACTTGAGCGGCTGCAGTTACATCAGTTAGAAAAGCACCGGTGGTTCAATCCAACGACCCCAAATCCTGCGCAGCAGTTAAACAAGAGGAGaaaacaCTAAAGTGAGAAAGTGGAAAGCACAATTAAAGTCACTAAACTAGCATTATCAGTTATTAATtactccctcatgtcattccaaacccctcaGATCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttatccgtcagcagtgcgacacacatCCAGTGCAGTACAGGACTTCTGaactcattatttttgttttaatatttttgtggttttCTTTCTGCATTTAAGAAGTTTCTCTTCAAAATGACAGCTGTAGCTCCAAACCCCTGACACCTTTCCtcatcttcagaaaacaaatgaaaagattTGAGATGAAATCAAATCATCACACCATGAGAGCTCTGtcctgcactgtgtgtgtgttcactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgCGCTCTTCTGGACGTGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttaatttgggTTCTCAATATAAACTAAACATGAATTTGAACTAAGGACATGAgctgagtaattaatgacaataatggtAATGAATAGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtacccaaccgagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgct
>TCONS_00005821
ATGATTGGAGAAGGAGCTTTTGGCAAGGTGTATGTGGCATCTCACAAACTTCGTGAAAGTGAAAAGGTAGAGAACTATTTTTTACATTCAGTCAGCATTTTCCtcctaattattaaatattaatagtttGTTGGCTTTAATTTGCCACTTACTTTGAAAAATTGACTGTTTTTTTTCGCAGGTTGCCCTGAAGTCTATAACCAAGCTTAAACAGGACCAATATCTCAACATTGTAAGTTGAATAATTCACACAACAATAACATTTTCCAGTTTTTGTTTCTGTACTTTGTTTCATTCTGCTCTGGTAATATCTTTGAAATCTGTTGTTCTTTCTAGGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGC

Function

symbol description
si:ch211-57m13.5 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000075780

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003716 False 2816 mRNA 0.48 9 6641514 6646684
TCONS_00005821 True 379 lncRNA 0.35 1 6644397 6644775

Neighbor

gene id symbol gene type direction distance location
XLOC_001877 si:ch211-57m13.3 coding upstream 11150 6625785 ~ 6630364 (+)
XLOC_001876 si:ch211-57m13.1 coding upstream 22681 6613279 ~ 6618833 (+)
XLOC_001875 reep5 coding upstream 123449 6496185 ~ 6518065 (+)
XLOC_001874 APH1A coding upstream 231733 6383270 ~ 6409781 (+)
XLOC_001873 tpm2 coding upstream 266120 6318227 ~ 6375394 (+)
XLOC_001879 si:ch211-57m13.6 coding downstream 18227 6664911 ~ 6670283 (+)
XLOC_001880 si:ch211-57m13.7 coding downstream 34839 6681523 ~ 6686975 (+)
XLOC_001881 si:ch211-57m13.8 coding downstream 50685 6697369 ~ 6702812 (+)
XLOC_001882 si:ch211-57m13.9 coding downstream 82986 6729670 ~ 6734797 (+)
XLOC_001883 si:ch211-57m13.10 coding downstream 101036 6747720 ~ 6753115 (+)
XLOC_001871 NA non-coding upstream 524578 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 760281 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 847988 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1053284 5587960 ~ 5588230 (+)
XLOC_001863 NA non-coding upstream 1098373 5527190 ~ 5543141 (+)
XLOC_001884 NA non-coding downstream 107586 6754270 ~ 6755766 (+)
XLOC_001890 BX537303.1 non-coding downstream 926632 7573316 ~ 7578051 (+)
XLOC_001897 NA non-coding downstream 1162027 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 1196722 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 1223925 7870609 ~ 7901888 (+)

Expression


Co-expression Network