XLOC_001880 (si:ch211-57m13.7)


Basic Information

Item Value
gene id XLOC_001880
gene name si:ch211-57m13.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6681523 ~ 6686975 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003718
GAAATTCCTCAGAGTGACAAACGAACGAGTAGAGTGAACAGTGATTATCGACTTTAGCGACTTGTTTTGCATCTCAAATGGCAAATAACACGTTAGCTGTGTTTTTTACTCGAGTTAATTTGATTAAGACAGTATTTGTCAACCATAATCATCAAAGTGATACAATGGCTTCTCCTACACCTCCTACCGTGATGAGAAGCCCAACAGaAAATCCAGAGACAAGGAGGAAAGGGAATAAAGCCTCTGCTTTCTTCAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGGCCGGAACAGAGTGGCTCCATTTGAACCACAGTCGGATATCGATGATTGCGAGCATCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGATCTTCAGCCgttgagtgttccgggcccctCCAGGATCAAGCAAACAGCAGATCCGGCCAGTCCTGAGTTCTCAACGGCCCTTACAGGTCATGTTGATACTGAGCTGGTGTGTCTGCCAGGCCAGATCTGGGAAGATCCTCAGCCTATCAGTGTCCATGGCCTCACCAATATTAAGAACATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAACACCCCTCTGATATTGATGGGACTGATGaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTCAAGAGAGTATTGAAGGCCGCAACGTGCCCTTTCCTGTGCTGTGACACCGATGTAGTCCAGCATCTTACACCACAACCTGAACCTGAACCTGAGCCAGAGCCAGAGTCAGAGCCAGAGTCAGAGTCAGAGTCAGATTCCGAGTCCGAGCCTGAGCCTGAGCCTGAGTCAGCGCCAAAATCCGAGTCCGAGCCCGAGCTCCAGCCAGAGTCTGAGCCAGGGCTGGAGAATGAAGCTGACCCTGAGGCAGTGCCTGCTGAAATTATGCCTGAAATCGCAGAACCCGCTGACCCTGAGTCAGTATGTCTGCCAGGCCCAGCTCCTGAAGAGCCTAAAGAGGCTTCTGGGCCCACTCGTAgattTGATCTGTCTGACTTTAAAGTAGACAGCATGATTGGAGAAGGAGCTTTTGGCAAGGTGTATGTGGCATCTCACAAACTTCGTGAAAGTGAAAAGGTTGCCCTGAAGTCTATAACCAAGCTTAAACAGGACCAATATCTCAACATTGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAGGTTGATGAATGCTCCGCAATGCCCAAACATCATTGGATTACACGACTGGATTGAGAATGAGAGCAGCTTCCTTCTCGTCTTGGAGTACCCAGAGTCAAGCCGGACCTTGGCTGATTACATCACAATGAGATGGCGAATTAGTGAAAAGCGAGCACGCCGGTTAATTCGTCAGTTGATCCGAGCTGTAAAGTTCTGCACTGAGCGTGGAGTTTTCCATGGCGATATCCACACGGAGAACATCCTGGTGACGAAACCCCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCAGTGAATTTCGAGGAGCCAGTGGGATCACGCCACCTGAGGTTTTCAAGGATCCCACATTCTATGCTGACCCGGCAAACATTTGGCAAATAGGCAGCGTGCTGTACGATATATTGCATGCAGAATTGCCCTTTTCTGACAAAGATTCAATAATGTTTGCATCCCTTGAGACACACCCTAGGTTAACTCCAGTATGCCAGAACCTGCTTTCCCAGTGTTTGGCCCGCTGTCCACTTGAGCGGCTGCAGTTACATCAGTTAGAAAAGCACCGGTGGTTCAATCCAACGACCCCAAATCCTGCGCAGCAGTTAAACAAGAGGAGaaaacaCTAAAGAAGCGAAGAGGAAAACAGCAGCATTTCCAGaaatttcacaagactgttaaagttattaattactctctcatgtcattccaaacccctcaGATCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGccctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggtgatccgtcagcagtgcgacacacatCCAGTGCAGTACAGGACTTctgaagtcattatttttgtttaaatattttagtttttctttctgCATTTAAGAAGTTTCGCTCCAAACCCCTGACACCTTTCCtcatcttcagaaaacaaatgaaaagattTGAGATGAAATCAAATCATCACACCATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgCGCTCTTCTGGACGTGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttcatttgtgttcTCAATATGAACTAAACATGAATTCGAACTAAGGACATGAgctgagtaattaatgacaataatggtAATGAATGGTGCCtagaccgcagctctgcacaagaccttTGGCCACAGGAGAAATGGTCGTACCCAAccaagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagtttggttcctcaccactgtcgccgctggcttgcttggttgggacttgtggagctgctcatcgatggatttgctcttcagtgtttggactttcagcagtgacaattaaaccacactgaactgaactgaactgaacttcaactccaGTGCTGTCACAGTTTTCTCCTCTAAAGTGTCATCAAAGATCTGCTCAACTATTTTCTACCTCATTAATGAATCTGGTGTTCTGTCATAAGAGAGACTGATTGTTTTATAATGAAGTGTTCATGATTGTTTTGTAATGAATTGTTCTTTGAATTGTTTTGTGATGAACTGCTTCTATGTATTGTTGGCtaataagtcaaataaaatcCTGTGAATCAAA
>TCONS_00005822
ATGATTGGAGAAGGAGCTTTTGGCAAGGTGTATGTGGCATCTCACAAACTTCGTGAAAGTGAAAAGGTAGAGAACTATTTTTTACATTCAGTCAACATTTTCCtcctaattattaaatattaatagtttGTTGGCTTTAATTTGCCACTTACTTTGAAAAATTGACTGTTTTTTTTCGCAGGTTGCCCTGAAGTCTATAACCAAGCTTAAACAGGACCAATATCTCAACATTGTAAGTTGAATAATTCACACAACAATAACATTTTCCAGTTTTTGTTTCTGTACTTTGTGTCATTCTGCTCTGGTAATATCTTTGAAATCTGTTGTTCTTTCTAGGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGC

Function

symbol description
si:ch211-57m13.7 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092740

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003718 False 3100 mRNA 0.47 9 6681523 6686975
TCONS_00005822 True 379 lncRNA 0.35 1 6684418 6684796

Neighbor

gene id symbol gene type direction distance location
XLOC_001879 si:ch211-57m13.6 coding upstream 11240 6664911 ~ 6670283 (+)
XLOC_001878 si:ch211-57m13.5 coding upstream 34839 6641514 ~ 6646684 (+)
XLOC_001877 si:ch211-57m13.3 coding upstream 51159 6625785 ~ 6630364 (+)
XLOC_001876 si:ch211-57m13.1 coding upstream 62690 6613279 ~ 6618833 (+)
XLOC_001875 reep5 coding upstream 163458 6496185 ~ 6518065 (+)
XLOC_001881 si:ch211-57m13.8 coding downstream 10394 6697369 ~ 6702812 (+)
XLOC_001882 si:ch211-57m13.9 coding downstream 42695 6729670 ~ 6734797 (+)
XLOC_001883 si:ch211-57m13.10 coding downstream 60745 6747720 ~ 6753115 (+)
XLOC_001884 NA coding downstream 67295 6754270 ~ 6755766 (+)
XLOC_001885 ddx4 coding downstream 197148 6884123 ~ 6905574 (+)
XLOC_001871 NA non-coding upstream 564587 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 800290 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 887997 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1093293 5587960 ~ 5588230 (+)
XLOC_001863 NA non-coding upstream 1138382 5527190 ~ 5543141 (+)
XLOC_001890 BX537303.1 non-coding downstream 886341 7573316 ~ 7578051 (+)
XLOC_001897 NA non-coding downstream 1121736 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 1156431 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 1183634 7870609 ~ 7901888 (+)

Expression


Co-expression Network