XLOC_001881 (si:ch211-57m13.8)


Basic Information

Item Value
gene id XLOC_001881
gene name si:ch211-57m13.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6697369 ~ 6702812 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003719
GAAATTCCTCAGAGTGACAAACGAACGAGTAGAGTGAACAGTGATTATCGACTTTAGCGACTTGTTTTGCATCTCAAATGGCAAATAACACGTTAGCTGTGTTTTTTACTCGACTTAATTTGATTAAGACAGTATTTGTCAACCATAATCATCAAAGTGACACGATGGCTTCTCCTACACCTCCTACAGTGATGAGAAGCCCAACAGaAAATCCAGAGACAAGGAGGAAAGGGAATAAAGCCTCTGCTTTCTTCAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGGCCGGAACAGAGTGGCTCCATTTGAACCACAGTCGGATATCGATGATTGCGAGCATCTGCCTGTTCCAGGTCCCTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCAGGCCAGGTCTGTGAAGACCCTCAGCCgttgagtgttccgggcccctCCAGGATCAAGCAAACAGCAGATCCGGCCAGTCCTGAGTTCTCAACGGCCCTTACAGGTCATGTTGATACTGAGCTGGTGTGTCTGCCAGGCCAGATCTGGGAAGATCCTCAGCCTATCAGTGTCCATGGCCTCACCAATATTAAGAACATGACGGATGCAGATTCGGTCTGTCCTCAGTCGCCTCCGTCTGTTCAACACCCCTCTGATATTGATGGGACTGATGaaaaacccaagaaaggaaggaaagggaAAAGAGTCTCTGCTTTCTTCAAGAGAGTATTGAAGGCCGCAACGTGCCCTTTCCTGTGCTGTGACACCGATGTAGTCCAGCATCTTACACCACAACCTGAACCTGAACCTGAACCTGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGTCCGAGTCAGAGTCAGAGTCAGATTCCGAGTCCGAGTCCGAGCCCGAGCTCCGGCCAGAGTCTGAGCCAGGGCTGGAGAATGAAGCTGACTCTGAGGCAGCGCCTGCTGAAATTATCCCTGAAATTGCAGAACCCGCTGACCCTGAGTCAGTATGTCTGCCAGGCCCAGCGCCTGAAGAGCCTAAAGAGGCTTCTGTGCCCACTCGTAGATTTGATCTGTCTGACTTTAAAGTAGACAGCATGATTGGAGAAGGAGCTTTTGGCAAGGTGTATGTGGCATCTCACAAACTTCGTGAAAGTGAAAAGGTTACCCTGAAGTCTATAACCAAGCTTAAACAGGACAAATATCTCAACATTGATGGTCATTCCACACCTGTGCTTGCGGAAGTGGCGATGATGCTCAGGTTGATGAATGCTCCGCAATGCCCAAACATCATCGGATTACACGACTGGATTGAGAATGAGAGCAGCTTCCTTCTCGTCTTGGAGTACCCAGAGTCAAGCCGGACCTTGGCTGATTACATCACAATGACATGGCGAATTAGTGAAAAGCGAGCACGCCGGTTAATTCGTCAGTTGATCCAAGCTGTAAAGTTCTGCACTGATCGTGGAGTTTTCCATGGAGATATTCACACGGAGAACATCCTGGTGACGAAACACCGATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTACCAGCGAGCCTTTCAACAGCAGTGAATTTCGAGGAGCCAGTGGGATCACGCCACCTGAGGTTTTCAAGGATCCCACATTCTATGCTGACCCGGCAAACATTTGGCAAATAGGCAGCGTGCTGTATGATATATTGCATGCAGATTTGCCCTTTTCTGACAAAGATTCAATAATGTTTGCATCCCTTGAGACACACCCCAGGTTATCTCCAGTATGCCAGAACCTGCTTTCCCAGTGTTTGGCCCGCTGTCCACTTGAGCGGCTGCAGTTACATCAGTTAGAAAAGCACCGGTGGTTCAATCCAACGACCCCAAATCCTGCGCAGCAGTTAAACAAGAGGAGaaaacaCTAAAGAAGCGAAGAGGAGAACAGCAGCATTTCCAGaaatttcacaagactgttaaagttattaattactccctcatgtcattccaaacccctcaGATCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttatccgtcagcagtgcgacacacatCCAGTGCATTACAGGACTTctgaagtcattatttttgttttaatatttttgtgtttttctttctgcatTAAAGAAGTTTCGCTCCAAACCCCTGACACCTTTCCtcatcttcagaaaacaaatgaaaagattTGAGATGAAATCAAATCATCAAACCATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgCGCTCTTCTGGATGTGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttcatttgtgttcTCAATATGAACTAAACATGAATTCGAACTAAGGACATGAgctgagtaattaatgacaataatggtAATGAATGGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtacccaaccgagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgctcatcgatggatttgctcttcagtgtttggactttcagcagtgacaattaaaccacactgaactgaactgaactgaactgaacttcaactccaGTGCTGTCACAGTTTTCTCCTCTAAAGTGTCATCAAAGATCTGCTCGACTATTTTCTCCCTCATTAATGAATCTGGTGTTCTGTCATAAGAGAGACTGATTGTTTTATAATGAAGTGTTCATGATTGTTTTGTAATGAATTGTTCTTTGAATTGTTTTGTGATGAACTGCTTCTATGTATTGTTGGCtaataagtcaaataaaatcCTGTGAATCAAA

Function

symbol description
si:ch211-57m13.8 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078271

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003719 True 3095 mRNA 0.47 9 6697369 6702812

Neighbor

gene id symbol gene type direction distance location
XLOC_001880 si:ch211-57m13.7 coding upstream 10394 6681523 ~ 6686975 (+)
XLOC_001879 si:ch211-57m13.6 coding upstream 27086 6664911 ~ 6670283 (+)
XLOC_001878 si:ch211-57m13.5 coding upstream 50685 6641514 ~ 6646684 (+)
XLOC_001877 si:ch211-57m13.3 coding upstream 67005 6625785 ~ 6630364 (+)
XLOC_001876 si:ch211-57m13.1 coding upstream 78536 6613279 ~ 6618833 (+)
XLOC_001882 si:ch211-57m13.9 coding downstream 26858 6729670 ~ 6734797 (+)
XLOC_001883 si:ch211-57m13.10 coding downstream 44908 6747720 ~ 6753115 (+)
XLOC_001884 NA coding downstream 51458 6754270 ~ 6755766 (+)
XLOC_001885 ddx4 coding downstream 181311 6884123 ~ 6905574 (+)
XLOC_001886 slc38a9 coding downstream 204903 6907715 ~ 6944407 (+)
XLOC_001871 NA non-coding upstream 580433 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 816136 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 903843 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1109139 5587960 ~ 5588230 (+)
XLOC_001863 NA non-coding upstream 1154228 5527190 ~ 5543141 (+)
XLOC_001890 BX537303.1 non-coding downstream 870504 7573316 ~ 7578051 (+)
XLOC_001897 NA non-coding downstream 1105899 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 1140594 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 1167797 7870609 ~ 7901888 (+)

Expression


Co-expression Network