XLOC_001882 (si:ch211-57m13.9)


Basic Information

Item Value
gene id XLOC_001882
gene name si:ch211-57m13.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6729670 ~ 6734797 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003720
GAAATTCCTCAGAGTGACAAACGAACCAGTACAGTGAACAGTGATTAACGACTTTAGCGACTTGTTTTGCATCTCAAATGGCAAATAACACGTCAGCTGCGTTTTTTACTCGAGTTAATTTGATTAAGCCTGTATTTGTCAACGATAATCATCAAAGTGATACGATGGCTTCTCCTACACCTCCTACAGTGATGAGAAGCCCAACAGAAAATCCAGAGAAAAGGAGGAAAGGGAATAAAGCCTCTGCTTTCTTCAAGAGAGCATGGAAGGCTGTGAAGCGCCCTTTCCTTTGCTGTGGCCGGAACAGAGTGGCTCCATTTGAACCACAGTCGGATATCGATGATTTCGAGCATCTGCCTGTTCCAGGTCCTTCCAGGACCGTCGCAGCACATGCAGACCTTGAGCCGGTGTGGCTGCCCGGCCAGGTCTGTGAAGACCCTCAGCCgttgagtgttccgggcccctCCAGGATCAAGCAAACAGCAGATCCGGCCCGTCCTGAGTCCTCAACGGCCCTGACAGGTCATGTTGATACTGAGCTGGTGTGTCTGCCAGGCCAGATCTGGGAAGATCCTCAGCCAATCAGTGTCCATGGCCTCACCAATATTAAGAACATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTCTGATATTGATGGGACTGATGaaaaacccaaaaaaggaagaaaagggAAAAGAGTCTCTGCTTTCTTCAAGAGAGTATGGAAGGCTGCAACGCGCCCTTTCCTGTGCTGTGACACAGATATAGTCCAGCATCTTACACCACAACCTGAACCTGAAACTGAGCCAGAGTCAGAGCCCGAGCCAGAGCTGGAGGAAGCTAACCCTGAGGCAGTATGTCTGCCAGGCCAGGTTCCTGAGGAGCCTAAAGAGGCTTCTGGACCCCCTCGTGgattTGATTTGTCTGACTTTGAAGTTGGAGCCGTGATTGGAGAAGGAGCTTTTGGCCAGGTGTTTGTGGCATCTCACAAACTTCGGAAAAGTGAAAAGgTTGCCCTGAAGTTTATCAACAAGAAGGAAGACAACCATTATCTCGACATTgatGGTCATTCCACACCTGTGCTTGCGGAAGTGGCAATGATGCTTAAGTTGAAGAATGCTCCGCAATGTCCAAACATCATCGGATTACACGACTGGATTGAGAATGAGAACAACTTCATTCTCAGTCTGGAGTACGCAGAGTCATACCAGACCTTGGATCAGTACATCACAGATACATTGGACATTGGTGAAAACCGATCACGCCAGTTAATGAGTCAGTTGATCCAAGCTGTCAAGTTCTGCACTGAGCATGGAGTTTTCCATGGAGATATCCACACGGAGAACATCATGGTGACTCAACCCCAATTACAGCTCAAATTGATCGACTTTGGTTGTGCTTGGCCAATTAGCAGCGAGCCTTTCAATAGCGATCAATATCGAGGAGTTATTTACTGCACGCCACCTGAGGTTTTCAGGGATCCCACATACCATGCTGACCCGGTAAACGTCTGGACAATTGGCATCGTGCTGTATGAAATCTTGCATGCAGAATTGCCCTTTCGTGACGAAGATTCAGTAATGTTTGCATCCGCTGAGATACACCCCAGGTTATCTCCAGCATGCCAGGACCTGATTTCCCAGTGTTTCATCCGCTGTCCACTTGAGCGGCTGAAGTTACATCAGTTAGAAGAGCACCAGTGGTTCAATCTAACAACCCCAAATCTAATGGAGCTGTTAGACGCCAGGATaaaacaCTAAAGAAGCGAGAAAGTGGAGAACAGCAGCATTTCCAGAAATTTCACAAGACTATTAAAGTTATTAATtactccctcatgtcattccaaacccctcaGATCTTACTTTTCAGTGTCAGTGTGTTGATGAGAGCTCTGtcctgcactgtgtgtgtgtccactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatCCAGTGCAGTACAGGACTTctgaagtcattatttttgtttaaatatttttgtttttctttctgcatTAAAGAAGTTTCACTCCAAACCCCTGACACCTTTCCtcatcttcagaaaacaaatgaaaacatttgagacGAAATCAAATCATCACACCATGAGAGCTCTGTCCTGCACTGTGTGTGTCCACTGCTGACGTTTACCTcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggcctctgggttaaacgtcagcagtgcgacacacatacagtgcactgCGCTCTTCTGGACGTGCGGtttgagggtcagagagctctcagatttcatctcaaatgttttcatttgtgttcTCAATATGAACTAAACATGAATTTGAACTAAGGACATGAgctgagtaattaatgacaataatggtAATGAATAGTGCCtagaccgcagctctgcacaagacctttggccacaggagaaatggtcgtacccaaccgagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagttttgttcctcgccactgtcgccgctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgctcttcagtgtttggactttcagcagtgacaattaaaccacactgaactgaactgaacttcaactccaGTGCTGTCACAGTTTTCTCCTCTAAAGTGTCATCAAAGATCTGCTCGACTATTTTCTCCCTCATTAATGAATCTGGTGTTCTGTCATAAGAGAGACTGATTGTTTTATAATGAAGTGTTCATGATTGTTTTGTAATTAATTGTTCTTTGAATTGTTTTGTGATGAACTGCTTTTATGTATTGTTGGCtaataagtcaaataaaatcCTGTGAATCAAA

Function

symbol description
si:ch211-57m13.9 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-61 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000095884

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003720 True 2940 mRNA 0.46 9 6729670 6734797

Neighbor

gene id symbol gene type direction distance location
XLOC_001881 si:ch211-57m13.8 coding upstream 26858 6697369 ~ 6702812 (+)
XLOC_001880 si:ch211-57m13.7 coding upstream 42695 6681523 ~ 6686975 (+)
XLOC_001879 si:ch211-57m13.6 coding upstream 59387 6664911 ~ 6670283 (+)
XLOC_001878 si:ch211-57m13.5 coding upstream 82986 6641514 ~ 6646684 (+)
XLOC_001877 si:ch211-57m13.3 coding upstream 99306 6625785 ~ 6630364 (+)
XLOC_001883 si:ch211-57m13.10 coding downstream 12923 6747720 ~ 6753115 (+)
XLOC_001884 NA coding downstream 19473 6754270 ~ 6755766 (+)
XLOC_001885 ddx4 coding downstream 149326 6884123 ~ 6905574 (+)
XLOC_001886 slc38a9 coding downstream 172918 6907715 ~ 6944407 (+)
XLOC_001887 psd3l coding downstream 294867 7029664 ~ 7233955 (+)
XLOC_001871 NA non-coding upstream 612734 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 848437 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 936144 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1141440 5587960 ~ 5588230 (+)
XLOC_001863 NA non-coding upstream 1186529 5527190 ~ 5543141 (+)
XLOC_001890 BX537303.1 non-coding downstream 838519 7573316 ~ 7578051 (+)
XLOC_001897 NA non-coding downstream 1073914 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 1108609 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 1135812 7870609 ~ 7901888 (+)

Expression


Co-expression Network