XLOC_001884


Basic Information

Item Value
gene id XLOC_001884
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6754270 ~ 6755766 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005823
TCAACACAAACAACAGttcaacaaaaacacaacaggggtaaaagaacattttaagcaTGAAATAATGCTCAGAATTAAAGAAAACATATCAACAACATGTGCATTCAAGTATTCTAAGACATGCCTTCTAAACAAATGATGTACTTTCTTATTGAAGGCACTGCAGCCAGTAGTGGTTTTCAATGCAGTTATTTATTAAGAGGTTAAAACCTACATGTGTTAAAATTAAATACGCTGTATCGCTCGaagcattaaattaaaaacaatgattacatttttgATAACTATTGATTGAAATCGAATATGTaggtaaaacaaaaaaacgtGGGAAACACTCTTAAAATATCACCAACACATCACGATTAATAAATATATGCTGAATGAATCTAAGGTGCTGTTTAGAGCATATTCCACCAACGGAACAATAAAACAAGGGGATCATCTTTAAATAGGTCGGCATCAAACAacctaaacaataaaaataaactagtCAGAAAGGGAGAAATCGAACAATTCAGTGCAGAGtgcattaaaagtaaattaaaggaaatgtatgtttacatgacaacaatATACTGAAGCGGAAAGATTTTCCTTTGTGTTTCAGAACATGTGCTGTAGtttgcatgccaggccagtagttggcgatgtcactttgtaaagagacactatctgcttgttaagttgtgacgtatGAAATGCTGTTTCCGGGTCCATACTCATTTGAActgagaaaatattcgtttatgaccacttttttttCATGTCATGGCCCACACGGAATTTGTGGGCGCAAAATTCGGCAGATTTTTAGCTTATCGTTGATTCTGTATATTTACTTgtgaacatttatatttattcagtttttaaattaatttgaatataattattgactaat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005823 True 898 lncRNA 0.33 2 6754270 6755766

Neighbor

gene id symbol gene type direction distance location
XLOC_001883 si:ch211-57m13.10 coding upstream 1155 6747720 ~ 6753115 (+)
XLOC_001882 si:ch211-57m13.9 coding upstream 19473 6729670 ~ 6734797 (+)
XLOC_001881 si:ch211-57m13.8 coding upstream 51458 6697369 ~ 6702812 (+)
XLOC_001880 si:ch211-57m13.7 coding upstream 67295 6681523 ~ 6686975 (+)
XLOC_001879 si:ch211-57m13.6 coding upstream 83987 6664911 ~ 6670283 (+)
XLOC_001885 ddx4 coding downstream 128357 6884123 ~ 6905574 (+)
XLOC_001886 slc38a9 coding downstream 151949 6907715 ~ 6944407 (+)
XLOC_001887 psd3l coding downstream 273898 7029664 ~ 7233955 (+)
XLOC_001888 fut10 coding downstream 499929 7255695 ~ 7264766 (+)
XLOC_001889 purg coding downstream 807989 7563755 ~ 7565074 (+)
XLOC_001871 NA non-coding upstream 637334 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 873037 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 960744 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1166040 5587960 ~ 5588230 (+)
XLOC_001863 NA non-coding upstream 1211129 5527190 ~ 5543141 (+)
XLOC_001890 BX537303.1 non-coding downstream 817550 7573316 ~ 7578051 (+)
XLOC_001897 NA non-coding downstream 1052945 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 1087640 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 1114843 7870609 ~ 7901888 (+)
XLOC_001900 NA non-coding downstream 1222751 7978517 ~ 7984582 (+)

Expression


Co-expression Network