XLOC_001887 (psd3l)


Basic Information

Item Value
gene id XLOC_001887
gene name psd3l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7029664 ~ 7233955 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003729
GAAGCATTTGATCGAGTCAGCAGCTCCTCTACACACGCAGAAATTGTCGCCAAAGCCAAGTACGAGTTTCTCTTCGGAAAGGCAGAAGACTCAAGCTCATCAGATAGCgTTACTTCTCCACCCCAAGCGAAAGAAAAAGGCAGCTCAATTCTTGACTCTACTCTCGATGATGATGACATTGATGAGACGTCACTCTTCCAGGAGATTGACCGAGAGCTGTCGAACCTGTTAAGCGGCCTGACAGCCCGGAGTCAGCATGCAGCGACCGAACAGGGCTCCCTGTCAGGAGACGCCACCGCCTCACCCATGATCCCCTGCAACGGACAAAACCAAACCTTGCCATCACAACTGGAAATGGCCAACCAGGGTCTAGACCTTCAGAACGGCCAGTCTGAGTTAACAGGAGACTCCCTCCTGACGTCTGGGCTGCTGTTTGACTCATGGTGCGAGGCACTCATAAAGGACCCCAGCTCAGTGATGGCGGCCGCAAATGAGCTGAGCTGCTTCAGCACTGGGAATGCACCAGATAAACTTGATGCCAGCCCAACTCCTGCTGGAGCACATGTGGAGCCATCCGGAGAGGTGCTCTCGCAAGAAAACTCCGGAAAGGAAACAGAGGGCAAGAGGACAGGGTCGCCCTCTCCCATCAGAACAGACGAACCTTCGGCAGAAATCGTGGACGAGTCTCTTGAGGAATCCAATAAAATCCTGGCGGAGGTCCCAGGAATCTTTAGCGGCTTTCTGGAAGGGGGCAAACTGCGGGACAAGCCGCCGAAGAAGCTGCGGTTTGTGGAGAGCAGAGCTGAAAGCCTAGTGAATGGAGAGATGCAAAACGGAAGTCATCAGAGCTGCAGTGTGAAAGAGGAAGTGACTCAGGACATACAGAGTACAGCAGCCGCAGGAGTGCCACAGGGGAGCGTGCTGAGACCCGAGCAAAAACCAACAGAAAACGGCACTGACAGGTGTTCTGCAGGTAAATCTGCTGCAGGTGAGATTGACACCACAGATGTCTTCAGCTGTCAGTTTGAGAACATCCTGGAGTCGGAGCGTCTGCGAGGGACTCTCTACAGCAGCATGGACTCACTGGACGCCCTGTCAAACCCTGTGCCTGAACCCACTCCGCAAAGCACTCTAGAACCCTCGTTTGCCTTCGACATTCCTCTCACTCCTATGATTCAGCAGCGACTCAAAGACAGGAGTCTGTTCCTGGAACCAGCAGCACCTGACCTGAGCTCGGACACTGAGGTGTTGAGCGTCACGAGCACAAAGGAGCGCGGAAAAACAGCTCTGGAGGTCACCTCATCCTTTCTCTCAGCAGGATGTAAGGACTCCTGTGCAGCTCTAGCTAACGGATTAAACGAGAGAGACCCAAAAGACTGGCTGCAGGGCTGTTTGAGCAGCGATGCGGGGCTGAAGGACGTGCTGTCGGACTGGGACTCAGACATGGATGTTGTGGAATGTCTTAAGGACACAGATGTTCTCCACAATGGCAGCCGGAGTGATCAGGAAGCTGCCCGACGTCTGGCCAGACGGCTCTACCACCTGGAGGGCTTCCGACGCTCGGATGTCGCCAAACATCTGGGCAAGAATAATGACTTCAGTAAGATGGTTGCAGAAGAGTACCTCACGTTCTTTGAGTTTACAGACCAGACATTGGACCAATCGCTCAGATGTTTTCTGAAAGCATTCTCGCTAATGGGCGAGACTCAGGAGAGGGAGCGGGTGTTAATTCATTTCTCTAATCGGTACTATCAGTGTAATCCCACCATCATCACCGCACAAGATGGAGTTCATTGCCTTACCTGTGCACTAATGCTGCTCAACACAGACCTTCATGGCCCTAATATTGGGAAGAAGATGACGTGCCAGGAATTCATCAATAACCTGGACGGTCTCAACGGTGGACAAGATTTCCCACGGGAGCTGCTGAAGTCATTGTATAACTCCATCAAGAACGAGAAGCTGGAATGGGCTGTaGATGGAGATGAGCTGAAGAAGTCTCTGTCTGAACTGGCGGATAAGAACCATCACTCTCACAGTAAGAGCATCAGTCGCATCAGCAGCGGCAGTAACCCCTTCCTAGACATCGCACACGACCCCAATGCTGCCGTCTACAAAACTGGCTTTTTGGCCCGCAAAATCCATGCCGACATGGACGGGAAGAAAACTCCAAGAGGAAAGCGAGGCTGGAAAACCTTTTATGCTGTTCTCAAAGGCATGATCCTCTACTTGCAGAAGgATGAGTATAAGCCGGAGAAGGCCCTATCAGAGGACGATCTGAAGAATGCCATCAGTGTGCATCACGCTCTCGCCATCAAGGCTATGGACTACGAGAAGAAGCCCAATGTCCTCAAGCTCAAGACTGCTGACTGGAGAGTTTTCCTCTTCCAGGCCCAGAGCCCTGAGGAAATGGAGTCTTGGATTAGAATAATCAACTCGGTGGCGGCCATGTTTTCTGCCCCATCTTTCCCTGCTGCCATTGGCTCTCAGAAGAAATTCAGCCGCCCGCTGCTGCCGGCGACCACCACTCGAATGTCTcagGAAGAGCAGCTGAAGTCCCATGAGGCCAAGCTGAAGCACGTCTCTACAGAGTTAGCTGAGCACAGATCCTACCCTCCAGACAAGAAGGTCAAAGCCAAAGAGATCGATGAGTACCGTTTGAAAGAGCACTACCTGGAATTTGAGGAGAACCGTTACGAGATGTACGTGAAGCTTCTGAAAGAGGGGGTGAAAGAGCTGCTGACGGCGAAGGATGGCGACGCAGCGCTGAAGAAGTCGCAGTCCAGCCCTTCTCTCAACCAGGATTCCCAGCCGGCCGCCGCCAAAGTCAAGCGCAACACGTCCGAGCGGAAGGATTACCGGCCTGAAACTCCTAAGGTTACATAGGCAGTGTTCTGCTTTTCTTTCTGAGAGCCATTGTATATCACGCGTGACTGTATTTTGATGTAATTTATTTATCTGCCGACAGTTGTATCAGAAAACATTTGTGTAAAATGTCAATTGATCAATTGATTGGAAGTTGTACATCTCTAGGTCTCCCTTGACCAGCCGGTTCTTGTGGAGCAAATAGTgtggttttcttttttatttgttagcGTGTCCAGATTTAGTagttgcactttattttacagtgtgtgcaCTTACAGTACACAGGAAATGACTTAATAGGGTTAaggtttggtttaggggtaggaCATGgtgactgtaaaataaagtgctagCGATTTTTGTTTAGAGAACATGACTGTCTCTTGATTGTGCTGTTCCCCTAATTTGcttttccttcaagagaagtatTTTCTTCAAGTTAGTGGAAAGGTCCACATGTAGATATCCCGCAGTAGTCTCACTCAGAGcgttaacttttattttaatatataaacgaGCAACAGATATAAGCTGAAACGCTAGAAAGGGTAATTTTGAGGATCCTTCAGGTTGTTAATGCATGGATTCGATGCGGAATTTGTCACGAAAGCCTTTGGTTGTCGTTGCTGATGTAGTTCACTATTAACCACCTACTAACAAACCACCGAATTGTCGATATTGCATCTACTCACGCGCATTAATGGATCGTACCAGCATGTCACAGCAATGGACCGAAACTCAAAGCAGATTATTTTCTAATGATGATTTCGAGGTACTTGCTGAGTTACGGCGTTTCAGACTGCGAGATGACATTAACGTCATCCACTGTGCAGTTTGTGCCAtctatttttttatctgtttgttgAAGTAAAGAGTATACTTCTGCTTTTTCAGTAGTGTAAATGCCAATTCTccttttgtgtattttataatcttatatatacacatatatatatttgaatttttaaTTCTCAGTTCAGAACATTATTGTTGTAAAGATGACGGTAGTATTTATAGTGCACTTTATTAGTTCCTTTGACTCTTTTAGAGAGTTTTTTAAAGGGTAGTGATATGTCACTTCATTATATCACAGGTTTTTCCAAGCATAACCAAAAGGATGGTTGGTTTTATTGAAGGTACACAGCCGAAGGTACAATTTTCACTCGTGTAAAGTCGTGTTAGTTTGTCCGTGCTCGCGTGTGTTTTTGCTGTCATGTTTAGGTTGTTCGAAGACACGGTTTGTAGAAGAATTTAGAACAGGTTGCTTTTCGTGATGCTGACTTTGAATTTCAGATGACATTTTCATTACCGATGACATGTCGTGAACACTATATGAACGTTCTACGCTGTTTATTGCACACCAACAAAGATTGTCCACGGTGGATCTATTTACTCGTTTGAGCTTTTAAAAAGGAATATGAATATGAAAAGCTGTTCACATTTACAGATATTAGTCCCCGAAGTCTATAATGACATTTGTTTACTTGAAATGTTTTTTGAGGacactttattattatgtttttgctAGAATTAAACAGATAGAAAGAATTCGTTCATATCTACGTTGTGTTATTGCAAGCTCTTTCAATGGACTTTATAGATTGTTGCtgcgtcatgtttttttttcttgctgtgAAATCGCAGGACATGTCATTTCTCCTGTCCAGTTCTGAATACAGAATTAGCACTTAgatgatgtttatttttatttatttgttgcaaAGTGtagaacaaaaaattatttttgagcaGTATTTACTCGCATAGTAATCAGTACTATAAAACTGTCATCAGTGTGAAAGGCCATGCGAAGAGATATGGACTCTTCTTTTATGTGCTGCAGTGTTCCATGTTATTTGTTCACGCTTCTCCAGACCAAATAGATTCCTGTGACACGTAACTCTGGCACTAACCCTTTAACAGTGCACGTCGTAGTACTTTTAAATAGTATCTCCATTCGTTATTATTTTGCATAGGACGGAAATCATAAGAAGCGATGGTGGCATGCAAGTGGActtcaaaatgaaaacaataacaacatgaaaagCAGTCAGACTTGCATAATTAAAAGCATTTAAGAGTCAGATATCTGTCTTAAGATGATATTTTCGACTGAAAAATTTGCTTTGTGTGTGACTTTTAATCTCCCGGGTGTGAACTACTCTTGTTTACCATGCCACAGTGTTGTTTATTTCTCCCTGAGCTGAACTTGATTGTATACATCTTGACTTTTTGTCCACGCAGATGTCATCTTTGTCTGTTTACTTTCTCAAACCCTGTAATGTATGACCTCCTCTCAAGATGCAATTGTGTGAGTATTGAAGGAGAGCAGCTGGTTTTAATGCGCCTTAGCCATCAGTTGGGCCGTTTGGTGTCCAAACTCAGATCTAGTgaactttctctctcttttttttttttagctgtgatGCTGTACTTCTCCTGTAAATGTTGTTAAATATGCCTGTCGCCCTGTGTTCTGAAGACTGAATTAGTTTGGTTGTGATCGGTTGGCATGAGCGTGTCTTACGCCTGTCCACAAAGATCAGGGACACAATGTTGGCTTCAGTGAATAAAACACTGTATTTAATCGTT
>TCONS_00003730
GGTTTGTGGGAAATGTCTGAGGGATGATACTAGTATGAGCCGGACATTAAACAGCGCTTTATTTTCTTACTTTTATCGGCAAGCTTTATACTTTTAACGGGGCTTTGGAGTTCGCGTGTCTCTGTTGGAATGTTAATGAAAACGCTGTGTGAGAGTTGGAGGTTTGCGCTCTGGACGCGTACGTGAAGTCTGCAGCAGCGATGCGGGGCTGAAGGACGTGCTGTCGGACTGGGACTCAGACATGGATGTTGTGGAATGTCTTAAGGACACAGATGTTCTCCACAATGGCAGCCGGAGTGATCAGGAAGCTGCCCGACGTCTGGCCAGACGGCTCTACCACCTGGAGGGCTTCCGACGCTCGGATGTCGCCAAACATCTGGGCAAGAAGTGAGTGCATTTAGCCACAAATTCAGTTCTGAGTTTCCCGCTTCTCAATGGTAATCGCACCATGCATGCACACTAAGGGCACACTTTGCTATCTGAACCGTGACCAGActcgtttcccagatcgtttgagaagtctGAGTGCTCTGAA
>TCONS_00003731
GTATGAGCCGGACATTAAACAGCGCTTTATTTTCTTACTTTTATCGGCAAGCTTTATACTTTTAACGGGGCTTTGGAGTTCGCGTGTCTCTGTTGGAATGTTAATGAAAACGCTGTGTGAGAGTTGGAGGTTTGCGCTCTGGACGCGTACGTGAAGTCTGCAGCGATGCGGGGCTGAAGGACGTGCTGTCGGACTGGGACTCAGACATGGATGTTGTGGAATGTCTTAAGGACACAGATGTTCTCCACAATGGCAGCCGGAGTGATCAGGAAGCTGCCCGACGTCTGGCCAGACGGCTCTACCACCTGGAGGGCTTCCGACGCTCGGATGTCGCCAAACATCTGGGCAAGAATAATGACTTCAGTAAGATGGTTGCAGAAGAGTACCTCACGTTCTTTGAGTTTACAGACCAGACATTGGACCAATCGCTCAGATGTTTTCTGAAAGCATTCTCGCTAATGGGCGAGACTCAGGAGAGGGAGCGGGTGTTAATTCATTTCTCTAATCGGTACTATCAGTGTAATCCCACCATCATCACCGCACAAGATGGAGTTCATTGCCTTACCTGTGCACTAATGCTGCTCAACACAGACCTTCATGGCCCTAATATTGGGAAGAAGATGACGTGCCAGGAATTCATCAATAACCTGGACGGTCTCAACGGTGGACAAGATTTCCCACGGGAGCTGCTGAAGTCATTGTATAACTCCATCAAGAACGAGAAGCTGGAATGGGCTGTaGATGGAGATGAGCTGAAGAAGTCTCTGTCTGAACTGGCGGATAAGAACCATCACTCTCACAGTAAGAGCATCAGTCGCATCAGCAGCGGCAGTAACCCCTTCCTAGACATCGCACACGACCCCAATGCTGCCGTCTACAAAACTGG
>TCONS_00003732
ATGGATGTTGTGGAATGTCTTAAGGACACAGATGTTCTCCACAATGGCAGCCGGAGTGATCAGGAAGCTGCCCGACGTCTGGCCAGACGGCTCTACCACCTGGAGGGCTTCCGACGCTCGGATGTCGCCAAACATCTGGGCAAGAATAATGACTTCAGTAAGATGGTTGCAGAAGAGTACCTCACGTTCTTTGAGTTTACAGACCAGACATTGGACCAATCGCTCAGGTACGTcacttcaaATGGAGTTCATTGCCTTACCTGTGCACTAATGCTGCTCAACACAGACCTTCATGGCCCTGTAAGTAACCTCTGA
>TCONS_00003733
CTTCCAGGGAAACTATCGCTCTGTATCCAAACACTCCAGCGAGTGATGCGGGAGAGAGCAGCGCTGCTTGTGTCTTGAAGCCAGGGACATTTGTGCGCCGGTCTGCTTTTGCTGGTCTATTCGTTTTCACTCTTTTCCTCACCGCCGCCTCCTCAAAACATCTCCCCTGTTGTGTGGAGACGTCTGCGGGCTCCGGATCAAGCTTGATCTCCTCTCTCGCGCCGTGTGCGTGTGAAAGGGCTTTAATCGGAGGAGATGATCGGGGTAAACAGCGTTCAGGGGACCGGAAAGGTCCGTATGCGGGCCGGCGGCTCCGTCAAGTACGGAAGGGAGGAGTCGGTCAGGCGTCAACCCCAGCATCGCTCCAAGTCTCTCAAAGTGTCCAATTCTGCCGAATTCAACACTGGACTGCCCAAGAAGGAGAAGTCATTGTATAACTCCATCAAGAACGAGAAGCTGGAATGGGCTGTaGATGGAGATGAGCTGAAGAAGTCTCTGTCTGAACTGGCGGATAAGAACCATCACTCTCACAGTAAGAGCATCAGTCGCATCAGCAGCGGCAGTAACCCCTTCCTAGACATCGCACACGACCCCAATGCTGCCGTCTACAAAACTGGCTTTTTGGCCCGCAAAATCCATGCCGACATGGACGGGAAGAAAACTCCAAGAGGAAAGCGAGGCTGGAAAACCTTTTATGCTGTTCTCAAAGGCATGATCCTCTACTTGCAGAAGgATGAGTATAAGCCGGAG
>TCONS_00003734
ATGATCGGGGTAAACAGCGTTCAGGGGACCGGAAAGGTCCGTATGCGGGCCGGCGGCTCCGTCAAGTACGGAAGGGAGGAGTCGGTCAGGCGTCAACCCCAGCATCGCTCCAAGTCTCTCAAAGTGTCCAATTCTGCCGAATTCAACACTGGACTGCCCAAGAAGGAGAAGTCATTGTATAACTCCATCAAGAACGAGAAGCTGGAATGGGCTGTaGATGGAGATGAGCTGAAGAAGTCTCTGTCTGAACTGGCGGATAAGAACCATCACTCTCACAGTAAGAGCATCAGTCGCATCAGCAGCGGCAGTAACCCCTTCCTAGACATCGCACACGACCCCAATGCTGCCGTCTACAAAACTGGCTTTTTGGCCCGCAAAATCCATGCCGACATGGACGGGAAGAAAACTCCAAGAGGAAAGCGAGGCTGGAAAACCTTTTATGCTGTTCTCAAAGGCATGATCCTCTACTTGCAGAAGgATGAGTATAAGCCGGAGAAGGCCCTATCAGAGGACGATCTGAAGAATGCCATCAGTGTGCATCACGCTCTCGCCATCAAGGCTATGGACTACGAGAAGAAGCCCAATGTCCTCAAGCTCAAGACTGCTGACTGGAGAGTTTTCCTCTTCCAGGCCCAGAGCCCTGAGGAAATGGAGTCTTGGATTAGAATAATCAACTCGGTGGCGGCCATGTTTTCTGCCCCATCTTTCCCTGCTGCCATTGGCTCTCAGAAGAAATTCAGCCGCCCGCTGCTGCCGGCGACCACCACTCGAATGTCTcagGAAGAGCAGCTGAAGTCCCATGAGGCCAAGCTGAAGCACGTCTCTACAGAGTTAGCTGAGCACAGATCCTACCCTCCAGACAAGAAGGTCAAAGCCAAAGAGATCGATGAGTACCGTTTGAAAGAGCACTACCTGGAATTTGAGGAGAACCGTTACGAGATGTACGTGAAGCTTCTGAAAGAGGGGGTGAAAGAGCTGCTGACGGCGAAGGATGGCGACGCAGCGCTGAAGAAGTCGCAGTCCAGCCCTTCTCTCAACCAGGATTCCCAGCCGGCCGCCGCCAAAGTCAAGCGCAACACGTCCGAGCGGAAGGATTACCGGCCTGAAACTCCTAAGGTTACATAG

Function

symbol description
psd3l Predicted to enable phospholipid binding activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Is expressed in hypothalamus and telencephalon. Orthologous to human PSD3 (pleckstrin and Sec7 domain containing 3).

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8195 Predicted to enable phospholipid binding activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Is expressed in hypothalamus and telencephalon. Orthologous to human PSD3 (pleckstrin and Sec7 domain containing 3).

Ensembl:

ensembl_id ENSDARG00000104820

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003729 False 5460 mRNA 0.45 15 7029664 7233955
TCONS_00003730 False 535 lncRNA 0.50 2 7083739 7102754
TCONS_00003731 False 886 processed_transcript 0.50 8 7083771 7210108
TCONS_00003732 False 315 mRNA 0.50 3 7102461 7122680
TCONS_00003733 False 750 mRNA 0.53 5 7182168 7221801
TCONS_00003734 True 1125 mRNA 0.53 8 7182423 7231381

Neighbor

gene id symbol gene type direction distance location
XLOC_001886 slc38a9 coding upstream 85257 6907715 ~ 6944407 (+)
XLOC_001885 ddx4 coding upstream 124090 6884123 ~ 6905574 (+)
XLOC_001884 NA coding upstream 273898 6754270 ~ 6755766 (+)
XLOC_001883 si:ch211-57m13.10 coding upstream 276549 6747720 ~ 6753115 (+)
XLOC_001882 si:ch211-57m13.9 coding upstream 294867 6729670 ~ 6734797 (+)
XLOC_001888 fut10 coding downstream 21740 7255695 ~ 7264766 (+)
XLOC_001889 purg coding downstream 329800 7563755 ~ 7565074 (+)
XLOC_001890 BX537303.1 coding downstream 339361 7573316 ~ 7578051 (+)
XLOC_001891 tex15 coding downstream 351973 7585928 ~ 7588878 (+)
XLOC_001892 ppp2cb coding downstream 359230 7593185 ~ 7617748 (+)
XLOC_001871 NA non-coding upstream 912728 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1148431 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 1236138 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1441434 5587960 ~ 5588230 (+)
XLOC_001897 NA non-coding downstream 574756 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 609451 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 636654 7870609 ~ 7901888 (+)
XLOC_001900 NA non-coding downstream 744562 7978517 ~ 7984582 (+)

Expression


Co-expression Network