XLOC_001888 (fut10)


Basic Information

Item Value
gene id XLOC_001888
gene name fut10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7255695 ~ 7264766 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003735
ACAGAAGGCAAACACCCCCAAAATCCACACgactaaaataaataacttaaaagtttcattttcattttgttttttttaacggAGCGCGCATGGACGGAGTGTTTAACATGAGGCGAATCTCCGTGAAAAAACTTTGTTCTTTTTGTCTCTGCGCGTGTGCGTTTGCGTTTTTAGTCATGACATTTCAgGTTATTGAGCTGTTGGGCCAGTTTGAGCAGACTGAACACAGACAGCAGATTAAACGCTTTGAGGACATTAAAGTTCAGGCGAACGCTCATGTTTCAGATGTCCAGTACCCTGTCATCGTGTGGTGGTCTCCTCTGACTGGAGAACTGGGACGTCTTGGAGAGTGTGGTCATAACAGATGTTTCTTCACTGTTAACAAGTCATATTATTCCCATCCACAGACTAAAGCTTTTCTTTTTTATGGCACTGATTTCAGCATTGAAAGTCTTCCTCTTCCGAGACACAAGCAGCATCAGTGGGCACTATTTCATGAGGAGTCTCCCAAAAATAACTACAAGCTTTTCCACAAGCCACTCATTACCCAATTCAACCACACAGCAACCTTCAGCCGCCACTCTCATCTGCCGCTCACCACACAGCACCTGGAGGACATCAACACCCTCACCGCACAAACACACCTGCTGCCTCTGTCCTACAAAAACCACCTCAGGCAAACTCTGGCGCCTGTTGTCTACGTCCAATCTGACTGTGACCCACCGTCTGATAGAGACACATACATCCGAGAGCTCATGCAGCACATTCAAGTGGACTCATACGGACAGTGTCTTCATAATAAAGACCTGCCGCCCCATCTGAGAGACTCTACCGCCATGGACGATCAGGATTTTTACAAGATCCTCGCCCAGTACAAGTTCATCCTGGCCTTCGAGAACGCTGTCTGTGACGATTATATAACTGAGAAACTGTGGAGGCCTCTCAAACTAGGTGTTGTTCCTGTGTATTATGGAGCACCAAACATACACATGTGGTTGCCAGATAACCAGAGTGCAATAGTGGTCAATCCCAACGAGCCGCCGAAGAAGCTCGCTCAGTATTTAAAGAGGCTGGACAAGAACGACTGGGAGTATCTGAAATATCTAGAGTGGAAGCACAAGCGGGAAATCACGAACATCAATCTGCTGAAAGAGCTGAAGGAACGGCCGTGGGGTGTCCAGGACATCACTCAGGATAACTTCATCGACGTCTTTGAGTGCATGGTGTGCAGCAGGGTCTGGGAGAACATCCACAGGCAGGAAGAGAAGCTTCCACCTAAAGTCTGGCGAGCTGAAGAAAGCCACCTCACGTGCCCGCCTCCAAAGCTCTTTGACTTCGCCTTGAGCTCCAGCTCGTCTCTTCGGCAGATGTGGGGAGCCAGTTATGAGCAGTCCAAGAGAGAAGCCAGAGCCCTCGCACAGATgcttcacacaaacacaaacttcaCAATCACACAGTTCTGGAGAGAAGTGTTTACTGACTGAGAGCACAACGAGAACTGGAT
>TCONS_00003736
ATGGACGGAGTGTTTAACATGAGGCGAATCTCCGTGAAAAAACTTTGTTCTTTTTGTCTCTGCGCGTGTGCGTTTGCGTTTTTAGTCATGACATTTCAgCTGTTGGGCCAGTTTGAGCAGACTGAACACAGACAGCAGATTAAACGCTTTGAGGACATTAAAGTTCAGGCGAACGCTCATGTTTCAGATGTCCAGTACCCTGTCATCGTGTGGTGGTCTCCTCTGACTGGAGAACTGGGACGTCTTGGAGAGTGTGGTCATAACAGATGTTTCTTCACTGTTAACAAGTCATATTATTCCCATCCACAGACTAAAGCTTTTCTTTTTTATGGCACTGATTTCAGCATTGAAAGTCTTCCTCTTCCGAGACACAAGCAGCATCAGTGGGCACTATTTCATGAGGAGTCTCCCAAAAATAACTACAAGCTTTTCCACAAGCCACTCATTACCCAATTCAACCACACAGCAACCTTCAGCCGCCACTCTCATCTGCCGCTCACCACACAGCACCTGGAGGACATCAACACCCTCACCGCACAAACACACCTGCTGCCTCTGTCCTACAAAAACCACCTCAGGCAAACTCTGGCGCCTGTTGTCTACGTCCAATCTGACTGTGACCCACCGTCTGATAGAGACACATACATCCGAGAGCTCATGCAGCACATTCAAGTGGACTCATACGGACAGTGTCTTCATAATAAAGACCTGCCGCCCCATCTGAGAGACTCTACCGCCATGGACGATCAGGATTTTTACAAGATCCTCGCCCAGTACAAGTTCATCCTGGCCTTCGAGAACGCTGTCTGTGACGATTATATAACTGAGAAACTGTGGAGGCCTCTCAAACTAGGTGTTGTTCCTGTGTATTATGGAGCACCAAACATACACATGTGGTTGCCAGATAACCAGAGTGCAATAGTGGTCAATCCCAACGAGCCGCCGAAGAAGCTCGCTCAGTATTTAAAGAGGCTGGACAAGAACGACTGGGAGTATCTGAAATATCTAGAGTGGAAGCACAAGCGGGAAATCACGAACATCAATCTGCTGAAAGAGCTGAAGGAACGGCCGTGGGGTGTCCAGGACATCACTCAGGATAACTTCATCGACGTCTTTGAGTGCATGGTGTGCAGCAGGGTCTGGGAGAACATCCACAGGCAGGAAGAGCTTCCACCTAAAGTCTGGCGAGCTGAAGAAAGCCACCTCACGTGCCCGCCTCCAAAGCTCTTTGACTTCGCCTTGAGCTCCAGCTCGTCTCTTCGGCAGATGTGGGGAGCCAGTTATGAGCAGTCCAAGAGAGAAGCCAGAGCCCTCGCACAGATgcttcacacaaacacaaacttcaCAATCACACAGTTCTGGAGAGAAGTGTTTACTGACTGA

Function

symbol description
fut10 Predicted to enable alpha-(1->3)-fucosyltransferase activity. Predicted to be involved in fucosylation. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi cisterna membrane and Golgi membrane. Predicted to be integral component of membrane. Orthologous to human FUT10 (fucosyltransferase 10).

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046920 alpha-(1->3)-fucosyltransferase activity molecular_function

KEGG:

id description
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-081022-183 Predicted to enable alpha-(1->3)-fucosyltransferase activity. Predicted to be involved in fucosylation. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi cisterna membrane and Golgi membrane. Predicted to be integral component of membrane. Orthologous to human FUT10 (fucosyltransferase 10).

Ensembl:

ensembl_id ENSDARG00000100322

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003735 False 1504 mRNA 0.48 4 7255695 7264766
TCONS_00003736 True 1383 mRNA 0.49 4 7255784 7264746

Neighbor

gene id symbol gene type direction distance location
XLOC_001887 psd3l coding upstream 21740 7029664 ~ 7233955 (+)
XLOC_001886 slc38a9 coding upstream 311288 6907715 ~ 6944407 (+)
XLOC_001885 ddx4 coding upstream 350121 6884123 ~ 6905574 (+)
XLOC_001884 NA coding upstream 499929 6754270 ~ 6755766 (+)
XLOC_001883 si:ch211-57m13.10 coding upstream 502580 6747720 ~ 6753115 (+)
XLOC_001889 purg coding downstream 298989 7563755 ~ 7565074 (+)
XLOC_001890 BX537303.1 coding downstream 308550 7573316 ~ 7578051 (+)
XLOC_001891 tex15 coding downstream 321162 7585928 ~ 7588878 (+)
XLOC_001892 ppp2cb coding downstream 328419 7593185 ~ 7617748 (+)
XLOC_001893 hint1 coding downstream 372045 7636811 ~ 7640797 (+)
XLOC_001871 NA non-coding upstream 1138759 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1374462 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 1462169 5788407 ~ 5793526 (+)
XLOC_001864 NA non-coding upstream 1667465 5587960 ~ 5588230 (+)
XLOC_001897 NA non-coding downstream 543945 7808711 ~ 7809243 (+)
XLOC_001898 NA non-coding downstream 578640 7843406 ~ 7849873 (+)
XLOC_001899 NA non-coding downstream 605843 7870609 ~ 7901888 (+)
XLOC_001900 NA non-coding downstream 713751 7978517 ~ 7984582 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010643 NA coding CM030129.1 CM030129.1 38043745 ~ 38050947 (+)