XLOC_001894 (fam136a)


Basic Information

Item Value
gene id XLOC_001894
gene name fam136a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7671260 ~ 7672949 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003745
ATGCTTTAGGTGTAGTAGGAGGTGACCTTACTGAAGTATTACAGAATTTTTTGCTATTTGCTTTCATTTCAGAAAGGCACATTTGAACAGTTTGGTAATGATTTCAAGTTTGCTTAGCTCGACGTGTTGATTTTGATCGAGGGCTTTATAGAGTTGCTGCTCGAAGAGGAAACTGTAGAATATAACTATAATGGCAGAGGCTCAGCAGGCTCGAGTGCAGAATGCAGTGGAGGAGATGGTACAGAACCTGGAGAAAGAGCACATCCGAAAGATGCAGGGCCGCATGTTCCGCTGCAGTGCAGAGTGCTGTGAGCATCCTGGGAACTCCATGAATCAGGTGCATCAGTGTATCGAGCGCTGCCACACACCTCTGGCTAAAGCCCAAGGCCTGGTCACCAGTGAACTCGAGCAGTTTCAG

Function

symbol description
fam136a Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; musculature system; and optic tectum. Orthologous to human FAM136A (family with sequence similarity 136 member A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2729 Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; musculature system; and optic tectum. Orthologous to human FAM136A (family with sequence similarity 136 member A).

Ensembl:

ensembl_id ENSDARG00000098401

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003745 True 418 mRNA 0.47 2 7671260 7672949

Neighbor

gene id symbol gene type direction distance location
XLOC_001893 hint1 coding upstream 30463 7636811 ~ 7640797 (+)
XLOC_001892 ppp2cb coding upstream 53512 7593185 ~ 7617748 (+)
XLOC_001891 tex15 coding upstream 82382 7585928 ~ 7588878 (+)
XLOC_001890 BX537303.1 coding upstream 93209 7573316 ~ 7578051 (+)
XLOC_001889 purg coding upstream 106186 7563755 ~ 7565074 (+)
XLOC_001895 ggcx coding downstream 30302 7703251 ~ 7723457 (+)
XLOC_001896 sftpba coding downstream 125138 7798087 ~ 7805010 (+)
XLOC_001897 NA coding downstream 135762 7808711 ~ 7809243 (+)
XLOC_001898 NA coding downstream 170457 7843406 ~ 7849873 (+)
XLOC_001899 NA coding downstream 197660 7870609 ~ 7901888 (+)
XLOC_001884 NA non-coding upstream 915494 6754270 ~ 6755766 (+)
XLOC_001871 NA non-coding upstream 1554324 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1790027 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 1877734 5788407 ~ 5793526 (+)
XLOC_001900 NA non-coding downstream 305568 7978517 ~ 7984582 (+)
XLOC_001901 NA non-coding downstream 315076 7988025 ~ 7992459 (+)

Expression


Co-expression Network